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JinghaoLu / MIN1PIPE

A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
GNU General Public License v3.0
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Missing functions in frame_reg.mat (thanks in advance!) #72

Open yehhyunjo opened 2 months ago

yehhyunjo commented 2 months ago

Dear Jinghao,

Thank you for sharing your work with the community.

While running min1pipe, I have encountered a few missing functions in the frame_reg.mat file. In particular, dominant_patch, fspecial, hier_clust, intra_section, nonstable_section, and inter_section seem to be missing from the github repository. I might be overlooking something so any help would be highly appreciated.

Thanks in advance.

JinghaoLu commented 2 months ago

I guess you are talking about frame_reg.m file? All the functions are actually in the folder called movement_correction but not elements. If you follow the link there should be no issue.

yehhyunjo commented 2 months ago

Aha I see, thank you! I was looking for the files in order to access the source code. Cheers.

Yehhyun Jo

Ph.D. Candidate

Brain/Bio Medical Microsystems Lab School of Electrical Engineering, KAIST

Office: E3-2 Rm #4221 E-mail: @. @.>

Website: http://bmm.kaist.ac.kr/

On Sun, Jun 16, 2024 at 10:41 PM JinghaoLu @.***> wrote:

I guess you are talking about frame_reg.m file? All the functions are actually in the folder called movement_correction but not elements. If you follow the link https://github.com/JinghaoLu/MIN1PIPE/tree/master?tab=readme-ov-file#usage there should be no issue.

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