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JingyiGF / HERBS

MIT License
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Saving transformation/registration points #44

Open nataliekoh opened 1 year ago

nataliekoh commented 1 year ago

Hi Jingyi! The software has been working great so far; thank you for being so responsive.

Is it possible at all the save the registration points or transformation after aligning a histological slice to an atlas? There are sometimes occasions where there is a need to go back to a histological image and readjust a probe track, or track another feature/draw something, for example. Currently, the only way to do that would be to re-register all the slices with those features in them, from scratch. Is there a way to circumvent this?

Thank you!

JingyiGF commented 1 year ago

Hi Natalie,

I think the functionality is there already if I remember correctly. I need to check.

We have national day of Norway today and have holiday this week. Next week I will be very busy but I will come back to this the week after.

Best, Jingyi

Sent from my iPhone

On 17 May 2023, at 16:52, Natalie Koh @.***> wrote:

 Hi Jingyi! The software has been working great so far; thank you for being so responsive.

Is it possible at all the save the registration points or transformation after aligning a histological slice to an atlas? There are sometimes occasions where there is a need to go back to a histological image and readjust a probe track, or track another feature/draw something, for example. Currently, the only way to do that would be to re-register all the slices with those features in them, from scratch. Is there a way to circumvent this?

Thank you!

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nataliekoh commented 1 year ago

Hi Jingyi,

Hm, okay - it's not in the cookbook and when I load a project, my transformation points don't get loaded. I also can't save these points as an object for each slice or load them in.

Okay, sounds good, hope you have a good holiday. Thank you!

Natalie

nataliekoh commented 1 year ago

Hi Jingyi - just following up on this. I know you probably are busy, but please let me know when you have the time to look into this as it would be incredibly helpful!

JingyiGF commented 1 year ago

Hi Natalie, sorry for the late reply. I have been a bit sick for some days and still have running nose. But I am trying to catch up with all issues. will go into this next week.

JingyiGF commented 1 year ago

Hi Natalie, I checked the code, the triangulation points are saved together with project. In other words, when you save a project, the triangulation points are saved in the project. When you load the project, first click/check the "trianglulation" button, then the points will show up.