Some question about the batch information in dataset1

JinmiaoChenLab / Batch-effect-removal-benchmarking

A benchmark of batch-effect correction methods for single-cell RNA sequencing data

70 stars 44 forks source link

Some question about the batch information in dataset1 #13

Open xuxiaohan opened 2 years ago

xuxiaohan commented 2 years ago

Hello,

I want to use the dataset in your benchmarking paper to evaluate an algorithm. I notice that you seperate the DCs cell into two batches accordding to the plate ID in dataset 1. ( P7 P8 P9 P10 as the batch 1, and P3 P4 P13 P14 as the batch 2) I wonder why the batch group was defined like this.

Thanks a lot.