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JinmiaoChenLab / GraphST

GNU Affero General Public License v3.0
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GraphST for horizontal integration #12

Open ciciQ777 opened 1 year ago

ciciQ777 commented 1 year ago

Hi @longyahui,

Thank you for this great package!

I am currently utilizing the GraphST horizontal integration on my multiple tissue slices (>=3 slices). I've been running the PASTE algorithm to align these slices, adhering to the PASTE tutorial which enabled me to obtain the center_layer. However, I find myself uncertain about which PASTE output to use as the GraphST input. I would greatly appreciate it if you could share the scripts you used to run PASTE, specifically those that resulted in the "mouse_anterior_posterior_brain_merged.h5ad" file. Any advice or suggestions on manual alignment would also be beneficial.

Thank you in advance!

longyahui commented 1 year ago

Hi @longyahui,

Thank you for this great package!

I am currently utilizing the GraphST horizontal integration on my multiple tissue slices (>=3 slices). I've been running the PASTE algorithm to align these slices, adhering to the PASTE tutorial which enabled me to obtain the center_layer. However, I find myself uncertain about which PASTE output to use as the GraphST input. I would greatly appreciate it if you could share the scripts you used to run PASTE, specifically those that resulted in the "mouse_anterior_posterior_brain_merged.h5ad" file. Any advice or suggestions on manual alignment would also be beneficial.

Thank you in advance!

Hi,

Thanks for your attention on our work.

Yes. We can share the code with you. May I have your email please?

Best regards,
Yahui
ciciQ777 commented 1 year ago

Hi @longyahui，

Thank you so much for sharing me your code! My email address is: sarahli231739@gmail.com.