The lack of spatial location information in dataset

JinmiaoChenLab / GraphST

GNU Affero General Public License v3.0

92 stars 14 forks source link

The lack of spatial location information in dataset #19

Open tqwang743 opened 12 months ago

tqwang743 commented 12 months ago

Hi,

It is a fantastic method for analyzing spatial transcriptomics!

I tried to apply the simulated_STARmap data and Simulated_seqFISH+ data you provide to my own model, but I find that there are no spatial location information in these two datasets. I would appreciate it if you could give me the dataset with more definitive information. I am looking forward to you giving me some solutions and suggestions to the difficulties I meet.

Thank you very much!

best, tqwang

longyahui commented 10 months ago

Hi,

Thank you for your questions.

We have uploaded all datasets used in our experiment to Zenodo. Thanks again.

Best regards,
Yahui

tqwang743 commented 10 months ago

Thanks for your reply! The simulated_STARmap data and Simulated_seqFISH+ data you provide are used to do cell type deconvolution task. In your model, we must need to use ST data with spatial location information to accomplish this task, but there are no spatial location information in these two datasets. I am wondering how you applied the model to these two datasets?