jinmiaochen
commented
5 years ago Hi Wen,
Thanks a lot for your feedback. Yes, we are integrating UMAP in cytofkit and will release soon.
Best, Jinmiao
Jinmiao Chen Principal Investigator Single-cell computational Immunology Singapore Immunology Network (SIgN) Agency for Science, Technology and Research (A*STAR) 8A Biomedical Grove IMMUNOS bldg, Level 3, SINGAPORE 138648 Tel: 65-64070395 Fax: 65-64642056 chen_jinmiao@immunol.a-star.edu.sgmailto:chen_jinmiao@immunol.a-star.edu.sg http://www.sign.a-star.edu.sg/
From: xwxdazhong notifications@github.com Sent: Monday, 21 January 2019 11:53 AM To: JinmiaoChenLab/cytofkit cytofkit@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [JinmiaoChenLab/cytofkit] would you kindly integrate UMAP? (#60)
Hi,
I have been using Cytofkit more and more recently, and I think I like it more, the more I use it. Recently there is a new tool UMAP come up and it is much faster than tSNE, and it also presents more meaningful plots as the distance between dots now reflect the relationship or similarity. there is a separated package for UMAP for sure, but it is a big pain to give up the developed pipeline and beautiful figure generation tools in cytofkit, would you kindly integrate UMAP in cytofkit some time?
thanks a lot!
Wen
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xwxdazhong
Hi,
I have been using Cytofkit more and more recently, and I think I like it more, the more I use it. Recently there is a new tool UMAP come up and it is much faster than tSNE, and it also presents more meaningful plots as the distance between dots now reflect the relationship or similarity. there is a separated package for UMAP for sure, but it is a big pain to give up the developed pipeline and beautiful figure generation tools in cytofkit, would you kindly integrate UMAP in cytofkit some time?
thanks a lot!
Wen