Ask for help on install cytofkit on debian

[chenziyi]

Hi sir,

I was trying to install cytofkit in my computer. At first, I install it with biocLite(). However, an error was produced as below:

Warning: S3 methods ‘as.character.tclObj’, ‘as.character.tclVar’, ‘as.double.tclObj’, ‘as.integer.tclObj’, ‘as.logical.tclObj’, ‘as.raw.tclObj’, ‘print.tclObj’, ‘[[.tclArray’, ‘[[<-.tclArray’, ‘$.tclArray’, ‘$<-.tclArray’, ‘names.tclArray’, ‘names<-.tclArray’, ‘length.tclArray’, ‘length<-.tclArray’, ‘tclObj.tclVar’, ‘tclObj<-.tclVar’, ‘tclvalue.default’, ‘tclvalue.tclObj’, ‘tclvalue.tclVar’, ‘tclvalue<-.default’, ‘tclvalue<-.tclVar’, ‘close.tkProgressBar’ were declared in NAMESPACE but not found Error : .onLoad failed in loadNamespace() for 'tcltk', details: call: fun(libname, pkgname) error: this system not support Tcl/Tk ERROR: lazy loading failed for package ‘cytofkit’

• removing ‘/home/chenziyi/software/R-3.5.2/library/cytofkit’

Also, when I went in to the software page, an notation says that :"this package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information. "

Could you please help me address this problem so I can analysis my data with your tool.

[SamGG]

Hi, Are you using MacOS? I think tcltk is installed with R, but try to run the following commands to verify it.

library(tcltk)
tk_choose.dir()
tclVersion()

[chenziyi]

Hi,

Thanks for your reply.

I have fixed this problem by compiling my R aith the command "./configure --with-tcl-config=/usr/lib64/tclConfig.sh --with-tk-config=/usr/lib64/tkConfig.sh".

Best.

在 2019-04-15 04:38:38，"Samuel Granjeaud" notifications@github.com 写道：

Hi, Are you using MacOS? I think tcltk is installed with R, but try to run the following commands to verify it.

library(tcltk) tk_choose.dir() tclVersion()

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[SamGG]

Thanks for your feedback. Sorry I misread the title of your issue. Could you close it if you solved it? Best.