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JinmiaoChenLab / cytofkit

cytofkit: an integrated flow/mass cytometry data analysis pipeline
http://jinmiaochenlab.github.io/cytofkit/
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cytofAsinh() function not available #71

Open agataraczynska opened 5 years ago

agataraczynska commented 5 years ago

Hello,

I would like to use cytofAsinh() function to transform my data, but I do not have this function in my cytofkit package. I had problems installing cytofkit package. In the end I somehow installed ‘cytofkit’ version 1.12.0 manually by downloading zip from Bioconductor and placing it in appropriate directory on my computer.

Is the function cytofAsinh() only available through the bulky cytofkit() function?

SamGG commented 5 years ago

Hi, If you simply need the cytofAsinh function (which should be applied to CyTOF data) you could simply copy the code starting at https://github.com/JinmiaoChenLab/cytofkit/blob/c4f93e5d849cf670c3825e5abacd850822c8eca7/R/cytof_preProcess.R#L241-L258 Best.

agataraczynska commented 5 years ago

Thank you very much! It worked for me.