Problem with cytofkit_shiny_dashboard()

AbbyKimball commented 5 years ago

A couple of other people have remarked on issues with the shinyapp, but I wanted to share my specific issue as well. It doesn't seem to recognize my selection of "cytofAsinh". Please note that it does seem to analyze if I select any other transformation method. Additionally, it seems to be finding a file ("cytofkit_shinyAPP_marker_heatmap.pdf") that isn't there. I have attached an image of my input settings.

Listening on http://127.0.0.1:3426
/var/folders/s0/5wl1358s7q36hy7lsnpytdv00000gn/T//Rtmp0u1YUX/d5a4dadac22ac4bb81f5e6b9/0.RDataWarning: Error in match.arg: 'arg' should be one of “autoLgcl”, “cytofAsinh”, “logicle”, “arcsinh”, “none”
  79: stop
  78: match.arg
  77: cytofkit
  73: observeEventHandler [/Library/Frameworks/R.framework/Versions/3.5/Resources/library/cytofkit2/shiny/server.R#70]
   2: shiny::runApp
   1: cytofkit_shiny_dashboard
Warning in file.remove("cytofkit_shinyAPP_marker_heatmap.pdf") :
  cannot remove file 'cytofkit_shinyAPP_marker_heatmap.pdf', reason 'No such file or directory'

I'm so close to getting it to run! I'm so excited to use the new program!!!

StarXian commented 5 years ago

I have the same problem, has it been fixed now?

jinmiaochen commented 4 years ago

bug fixed already. please download the update at https://github.com/JinmiaoChenLab/cytofkit2

jinmiaochen commented 4 years ago

Hi Abby,

We have fixed this bug. Please download the updated version at https://github.com/JinmiaoChenLab/cytofkit2/issues/10

Thanks a lot for your feedback.

Best, Jinmiao

lsasser919 commented 3 years ago

I am having the same issue of the shiny app being greyed out after analysis. Also, it says that the Rdata file is saved but I cannot locate it anywhere. I tried to uninstall the package and re install to make sure it was the most recent version but I am still running in to the problem. Is there anything else I can try? Thanks! Phenograph Trouble

JinmiaoChenLab / cytofkit2

Problem with cytofkit_shiny_dashboard() #7