Closed jblamyatifremer closed 7 years ago
jblamyatifremer
commented
7 years ago 5 sec later I found the solution. Maybe It will help somebody.
Rather than "save(test,file=mypath4)" use "save(test,file=mypath4[5])" in my case.
For me, it is a bug, but I do not know where should I submit this observation ?
Do not mind.
JB
JiscaH
commented
7 years ago Hello,
I spotted the problem, which is unrelated to sequoia, and not a bug: the variable 'version' is a vector of length 14, with "x86_64-w64-mingw32", "x86_64", "mingw32", etc. (which you can check by simply typing 'version' into R - something new I discovered). Consequently, your variables 'name' and 'path4' will also become vectors of length 14. The variable you are looking for appears to be called 'R.version.string'.
Please don't hesitate to contact me with any further queries!
I'm quite curious to see how Sequoia will hold up in your simulations - will you be comparing it to any other pedigree reconstruction method?
Jisca
On 01/08/2017 23:27, jblamyatifremer wrote:
Dear Jisca,
Again It is me. Everything is ok with the new version of Sequoia, but I remark that is impossible to export a .Rdata after a sequoia run. The error message is weird :
-----------------------------------------------------------------------------
EstimateAssignmentPerformance <- function (geno=NA,ped=NA,lfh=NA,nb_repetition=NA,nb_loci= [... more lines with Sequoia in it ...] } Run the function with small numbers test <- EstimateAssignmentPerformance(geno=geno, ped=ped1,lfh=lfh1, nb_repetition=1 , nb_loci=c(5,10), ErroR=0.01 ) [... output from the function ...] Trying to export test dataset as test.Rdata name <- paste("test",version,".Rdata",sep="") mypath4 <- file.path("G:/IFREMER/02-PROJET/GENOYSTER/07_Sequoia_bug/ReproduceBug",name,fsep = .Platform$file.sep) print(mypath4) the output of this line is not OK... I should have only one line[1] "G:/IFREMER/02-PROJET/GENOYSTER/07_Sequoia_bug/ReproduceBug/testx86_64-w64-mingw32.Rdata" [2] "G:/IFREMER/02-PROJET/GENOYSTER/07_Sequoia_bug/ReproduceBug/testx86_64.Rdata" [3] "G:/IFREMER/02-PROJET/GENOYSTER/07_Sequoia_bug/ReproduceBug/testmingw32.Rdata" [4] "G:/IFREMER/02-PROJET/GENOYSTER/07_Sequoia_bug/ReproduceBug/testx86_64, mingw32.Rdata" [5] "G:/IFREMER/02-PROJET/GENOYSTER/07_Sequoia_bug/ReproduceBug/test.Rdata" [6] "G:/IFREMER/02-PROJET/GENOYSTER/07_Sequoia_bug/ReproduceBug/test3.Rdata" [7] "G:/IFREMER/02-PROJET/GENOYSTER/07_Sequoia_bug/ReproduceBug/test4.1.Rdata" [8] "G:/IFREMER/02-PROJET/GENOYSTER/07_Sequoia_bug/ReproduceBug/test2017.Rdata" [9] "G:/IFREMER/02-PROJET/GENOYSTER/07_Sequoia_bug/ReproduceBug/test06.Rdata" [10] "G:/IFREMER/02-PROJET/GENOYSTER/07_Sequoia_bug/ReproduceBug/test30.Rdata" [11] "G:/IFREMER/02-PROJET/GENOYSTER/07_Sequoia_bug/ReproduceBug/test72865.Rdata" [12] "G:/IFREMER/02-PROJET/GENOYSTER/07_Sequoia_bug/ReproduceBug/testR.Rdata" [13] "G:/IFREMER/02-PROJET/GENOYSTER/07_Sequoia_bug/ReproduceBug/testR version 3.4.1 (2017-06-30).Rdata" [14] "G:/IFREMER/02-PROJET/GENOYSTER/07_Sequoia_bug/ReproduceBug/testSingle Candle.Rdata"
save(test,file=mypath4) Error in gzfile(file, "wb") : invalid 'description' argument In addition: Warning message: In if (!nzchar(file)) stop("'file' must be non-empty string") : the condition has length > 1 and only the first element will be used ##-----------------------------------------------------------------------------I attach folder to reproduce the bug. Cheers,
JB
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Dear Jisca,
Again It is me. Everything is ok with the new version of Sequoia, but I remark that is impossible to export a .Rdata after a sequoia run. The error message is weird :
-----------------------------------------------------------------------------
I attach folder to reproduce the bug. Cheers,
JB