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JoachimGoedhart / VolcaNoseR

Shiny app for making and annotating Volcano plots
https://huygens.science.uva.nl/VolcaNoseR/
GNU General Public License v3.0
20 stars 7 forks source link

Site wasn't available when downloading iPlot html #19

Open Garrythepro opened 3 months ago

Garrythepro commented 3 months ago

It takes multiple tries to download an iPlot html. Error is the the site wasn't available. https://amsterdamstudygroup.shinyapps.io/VolcaNoseR/ https://goedhart.shinyapps.io/VolcaNoseR/

JoachimGoedhart commented 3 months ago

Thanks for reporting. I have tried to reproduce this error with the example data, but that seems to work. Does it work for you with the example data? If it does, it may have to do with the amount of datapoints? I'm happy to check it with your data, if that's an option

Garrythepro commented 3 months ago

With example data, it works. Try uploading a csv file. I got mine from geo2r. The amount of data points is huge, about 30000.

JoachimGoedhart commented 3 months ago

The size may be the issue, I've not tried if there's a size limit for the iPlot. Does the normal plot work? You may decrease the size of the dataset by taking out data that has low significance and/or low Fold Change and see if that works. (the purpose of a volcano plot is to show all data, but on the other hand, plotting thousands of points near the origin doesn't really add information).