There were some warnings saying that python setup.py install was deprecated, so I've used py2cfg to create the .toml file. Now it works with updated versions of setuptools.
Updated the README.md installation guide to avoid issues
Major issues:
Fixed dendrogram names issue related with int/float use when calling dendrogram Y coordinates in create_dendogram_features()
Fixed min and max values of y_ranges in dendrogram causing shift of dendrogram
Minor issues:
Updated syntaxis for updated versions of networx and stats modules
Future tasks:
[ ] Update to Bokeh 3
[ ] Solve duplicate use of patch() and patches() call in genome neighborhood figure to improve performance
[ ] Update packages and syntaxis to work with python >3.10
Making installation smoother:
python setup.py installwas deprecated, so I've used py2cfg to create the .toml file. Now it works with updated versions of setuptools.Major issues:
create_dendogram_features()Minor issues:
Future tasks: