Joelgranados
commented
12 years ago Hey Eric.
Do you have GTK+ and ImageMagick installed? You need to have both to run EBImage. Do you get a allert pop-up from R? Thx for the report. There needs to be a way to install getopt without using getopt. I'll work on a bootstrapping mechanism.
On Wed, Apr 11, 2012 at 12:51 AM, egraham < reply@reply.github.com
wrote:
Updated to R version 2.15.0. Then tried to follow instructions. My comments are in [brackets], commands I tried follow the ">" prompt, output follows immediately:
source("F:/CENS/Projects/EcoIP/ecoip.R", chdir=TRUE) Error in library(getopt) : there is no package called ‘getopt’
ecoip_exec("--rinstall") Error: could not find function "ecoip_exec"
[So, went to Packages > Install Package(s) > getopt. Installed fine.]
source("F:/CENS/Projects/EcoIP/ecoip.R", chdir=TRUE) Error in library(EBImage) : there is no package called ‘EBImage’ Make sure you call source with chdir=TURE Loading required package: fields === R MUST HAVE fields and digest INSTALLED === Loading required package: EBImage === Install EBImage. Consider instructions at http://www.bioconductor.org/packages/release/bioc/html/EBImage.html === Warning messages: 1: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘fields’ 2: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘EBImage’
source("http://bioconductor.org/biocLite.R") biocLite("EBImage")
[Installed fine.]
source("F:/CENS/Projects/EcoIP/ecoip.R", chdir=TRUE) Loading required package: abind Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared object 'C:/Program Files/R/R-2.15.0/library/EBImage/libs/i386/EBImage.dll': LoadLibrary failure: The specified procedure could not be found.
Error : package/namespace load failed for ‘EBImage’ Make sure you call source with chdir=TURE Loading required package: fields === R MUST HAVE fields and digest INSTALLED === Loading required package: EBImage Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared object 'C:/Program Files/R/R-2.15.0/library/EBImage/libs/i386/EBImage.dll': LoadLibrary failure: The specified procedure could not be found.
In addition: Warning message: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘fields’ === Install EBImage. Consider instructions at http://www.bioconductor.org/packages/release/bioc/html/EBImage.html ===
ecoip_exec("--rinstall") Error in getopt(optMat, opt = cmdArgs) : long flag "rinstall" is invalid
[Hm. I will download the program Process Explorer to find out if EBImage.dll is being loaded. It exists in the specified subdirectory, just don't know why it's not loading.]
Reply to this email directly or view it on GitHub: https://github.com/Joelgranados/EcoIP/issues/14
Joel Andrés Granados IT University of Copenhagen Copenhagen, Denmark.
Updated to R version 2.15.0. Then tried to follow instructions. My comments are in [brackets], commands I tried follow the ">" prompt, output follows immediately:
[So, went to Packages > Install Package(s) > getopt. Installed fine.]
[Installed fine.]
Error : package/namespace load failed for ‘EBImage’ Make sure you call source with chdir=TURE Loading required package: fields === R MUST HAVE fields and digest INSTALLED === Loading required package: EBImage Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared object 'C:/Program Files/R/R-2.15.0/library/EBImage/libs/i386/EBImage.dll': LoadLibrary failure: The specified procedure could not be found.
In addition: Warning message: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘fields’ === Install EBImage. Consider instructions at http://www.bioconductor.org/packages/release/bioc/html/EBImage.html ===
[Hm. I will download the program Process Explorer to find out if EBImage.dll is being loaded. It exists in the specified subdirectory, just don't know why it's not loading.]