Closed JohannesWiesner closed 1 year ago
What happened to activate=True
? Can't find it anymore in the current neurodocker docs . But with older images, it was there (see nipype_tutorial)
Checked again with docker run --rm kaczmarj/neurodocker:0.7.0 generate docker --help
, here it is still found.
Opened an issue for that: https://github.com/ReproNim/neurodocker/issues/506
With this commit (1171de5100f258b530ae4d96701bbd265830d022), the problem is still not solved but at least we can already activate the csp
env once the container is running using source activate csp
(conda activate csp
will not work!)
Can we use ENTRYPOINT to execute "source activate csp"? https://stackoverflow.com/questions/21553353/what-is-the-difference-between-cmd-and-entrypoint-in-a-dockerfile
Difference between source activate and conda activate: https://stackoverflow.com/q/49600611/8792159
Might be related to https://github.com/ReproNim/neurodocker/issues/354