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John-P / wsic

Whole Slide image (WSI) conversion for brightfield histology images
MIT License
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Convert SVS to NDPI #111

Open iamalonso opened 1 year ago

iamalonso commented 1 year ago

Description

As a user I would like to convert a WSI in Aperio SVS format to Hamamatsu NDPI file. Is this possible?

John-P commented 1 year ago

Hi there, currently writing NDPI is not supported, but it is certainly possible to add. I'll look into this.

John-P commented 1 year ago

@iamalonso Can you advise what software or library you would like to read the NDPI images with? This would help with validating the output works as expected.

iamalonso commented 1 year ago

Hello John, Just wanted to let you know that I've received the information. I'll review it shortly and get back to you with an update. Thanks for your understanding.

On Thu, May 18, 2023 at 10:21 AM John Pocock @.***> wrote:

@iamalonso https://github.com/iamalonso Can you advise what software or library you would like to read the NDPI images with? This would help with validating the output works as expected.

— Reply to this email directly, view it on GitHub https://github.com/John-P/wsic/issues/111#issuecomment-1553136801, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADFG24ONGVVUPJJREHI23STXGYV65ANCNFSM6AAAAAAW36AQU4 . You are receiving this because you were mentioned.Message ID: @.***>

-- Alonso

iamalonso commented 1 year ago

Hi John, this is our requirement: "As a user, I would like to convert the image from .svs format to .ndpi format in order to visualize it using the software NDP.view or NDP.serve by Hamamatsu". Note: I have included Francisca and Jorge, the users I'm assisting, on this request by putting them on CC. Regards, Alonso

On Fri, May 19, 2023 at 4:17 PM Alonso Carvajal Moreno < @.***> wrote:

Hello John, Just wanted to let you know that I've received the information. I'll review it shortly and get back to you with an update. Thanks for your understanding.

On Thu, May 18, 2023 at 10:21 AM John Pocock @.***> wrote:

@iamalonso https://github.com/iamalonso Can you advise what software or library you would like to read the NDPI images with? This would help with validating the output works as expected.

— Reply to this email directly, view it on GitHub https://github.com/John-P/wsic/issues/111#issuecomment-1553136801, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADFG24ONGVVUPJJREHI23STXGYV65ANCNFSM6AAAAAAW36AQU4 . You are receiving this because you were mentioned.Message ID: @.***>

-- Alonso

-- Alonso