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John-P / wsic

Whole Slide image (WSI) conversion for brightfield histology images
MIT License
32 stars 4 forks source link

🚸 Improve CLI #120

Closed John-P closed 1 year ago

John-P commented 1 year ago
  1. Better inference of the output format from the path provided to convert. Now works with .ngff, .zip, .tif, .ome.tiff, and .ome.tif.
  2. Add test for writing zipped zarr from CLI.
codecov[bot] commented 1 year ago

Codecov Report

:exclamation: No coverage uploaded for pull request base (dev@fff38f9). Click here to learn what that means. The diff coverage is 78.57%.

@@          Coverage Diff           @@
##             dev     #120   +/-   ##
======================================
  Coverage       ?   87.50%           
======================================
  Files          ?       15           
  Lines          ?     2088           
  Branches       ?        0           
======================================
  Hits           ?     1827           
  Misses         ?      261           
  Partials       ?        0
Impacted Files Coverage Δ
wsic/cli.py 82.63% <77.77%> (ø)
wsic/writers.py 86.42% <100.00%> (ø)

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