John-P / wsic

Whole Slide image (WSI) conversion for brightfield histology images
MIT License
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⬆️ Bump zarr from 2.14.2 to 2.16.0 #140

Closed dependabot[bot] closed 1 year ago

dependabot[bot] commented 1 year ago

Bumps zarr from 2.14.2 to 2.16.0.

Release notes

Sourced from zarr's releases.

v2.16.0

See release notes https://zarr.readthedocs.io/en/stable/release.html#release-2-16-0


What's Changed

New Contributors

Full Changelog: https://github.com/zarr-developers/zarr-python/compare/v2.15.0...v2.16.0

v2.15.0

See release notes https://zarr.readthedocs.io/en/latest/release.html#release-2-15-0


What's Changed

... (truncated)

Changelog

Sourced from zarr's changelog.

2.16.0

Enhancements


* Allow for partial codec specification in V3 array metadata.
  By :user:`Joe Hamman <jhamman>` :issue:`1443`.
  • Add __contains__ method to KVStore. By :user:Christoph Gohlke &lt;cgohlke&gt; :issue:1454.

  • Block Indexing: Implemented blockwise (chunk blocks) indexing to zarr.Array. By :user:Altay Sansal &lt;tasansal&gt; :issue:1428

Maintenance


* Refactor the core array tests to reduce code duplication.
  By :user:`Davis Bennett &lt;d-v-b&gt;` :issue:`1462`.

* Style the codebase with ``ruff`` and ``black``.
  By :user:`Davis Bennett` &lt;d-v-b&gt; :issue:`1459`

.. _release_2.15.0:

2.15.0
------

Enhancements
</code></pre>
<ul>
<li>
<p>Implement more extensive fallback of getitem/setitem for orthogonal indexing.
By :user:<code>Andreas Albert &lt;AndreasAlbertQC&gt;</code> :issue:<code>1029</code>.</p>
</li>
<li>
<p>Getitems supports <code>meta_array</code>.
By :user:<code>Mads R. B. Kristensen &lt;madsbk&gt;</code> :issue:<code>1131</code>.</p>
</li>
<li>
<p><code>open_array()</code> now takes the <code>meta_array</code> argument.
By :user:<code>Mads R. B. Kristensen &lt;madsbk&gt;</code> :issue:<code>1396</code>.</p>
</li>
</ul>
<p>Maintenance</p>
<pre><code>
* Remove ``codecov`` from GitHub actions.
  By :user:`John A. Kirkham &lt;jakirkham&gt;` :issue:`1391`.

* Replace ``np.product`` with ``np.prod`` due to deprecation.
  By :user:`James Bourbeau &lt;jrbourbeau&gt;` :issue:`1405`.

&lt;/tr&gt;&lt;/table&gt; 
</code></pre>
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>

<ul>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/9623d5c26a5cefbe92f9ec8af44ee53b75d9dc38"><code>9623d5c</code></a> updated release notes for 2.16.0 (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/1471">#1471</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/a5d8a958a6821c97739a1547149eb1eede299686"><code>a5d8a95</code></a> chore: expose codecov token (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/1473">#1473</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/13cdbfff86de2f39d520e6333687e1b434857eca"><code>13cdbff</code></a> style: add ruff and black to pre-commit (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/1459">#1459</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/fd144c471701348c5cf7c08a6c884fd734907895"><code>fd144c4</code></a> Merge branch 'main' into ruff_black_prelude</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/8fc3b4b7cdd85117ed83a88cb7f30d5691eae1a1"><code>8fc3b4b</code></a> Fix typo (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/1468">#1468</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/d27a6aa6e7b561af266c3b15d0478ac9caa6f2bc"><code>d27a6aa</code></a> Merge branch 'main' of <a href="https://github.com/zarr-developers/zarr-python">https://github.com/zarr-developers/zarr-python</a> into ru...</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/1558041db6c829654f3af738f16e41f0f0bfeac1"><code>1558041</code></a> Refactor core tests, round 2 (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/1462">#1462</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/b0c50e1c284c6ce693bd306b77d0a5f00df2d0e8"><code>b0c50e1</code></a> docs: update release notes</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/b79f1e2959a7cb2a2d5a0d3de77aa06ef29d026e"><code>b79f1e2</code></a> chore: add linting commit to list of revs ignored for git blame</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/4e348d6b80c96da461fd866576c971b8a659ba15"><code>4e348d6</code></a> style: lint the codebase</li>
<li>Additional commits viewable in <a href="https://github.com/zarr-developers/zarr-python/compare/v2.14.2...v2.16.0">compare view</a></li>
</ul>
</details>

<br />
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dependabot[bot] commented 1 year ago

Superseded by #144.