John-P / wsic

Whole Slide image (WSI) conversion for brightfield histology images
MIT License
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⬆️ Bump zarr from 2.12.0 to 2.13.2 #34

Closed dependabot[bot] closed 2 years ago

dependabot[bot] commented 2 years ago

Bumps zarr from 2.12.0 to 2.13.2.

Release notes

Sourced from zarr's releases.

v2.13.2

See release notes https://zarr.readthedocs.io/en/stable/release.html#release-2-13-2

v2.13.1

See release notes https://zarr.readthedocs.io/en/stable/release.html#release-2-13-1

v2.13.0

See release notes https://zarr.readthedocs.io/en/stable/release.html#release-2-13-0

v2.13.0a2

See release notes https://zarr.readthedocs.io/en/latest/release.html#release-2-13-0

v2.13.0a1

See release notes https://zarr.readthedocs.io/en/latest/release.html#release-2-13-0

Changelog

Sourced from zarr's changelog.

2.13.2

  • Fix test failure on conda-forge builds (again). By :user:Josh Moore <joshmoore>; see zarr-feedstock#65 <https://github.com/conda-forge/zarr-feedstock/pull/65>_.

.. _release_2.13.1:

2.13.1

  • Fix test failure on conda-forge builds. By :user:Josh Moore <joshmoore>; see zarr-feedstock#65 <https://github.com/conda-forge/zarr-feedstock/pull/65>_.

.. _release_2.13.0:

2.13.0

Major changes


* **Support of alternative array classes** by introducing a new argument,
  meta_array, that specifies the type/class of the underlying array. The
  meta_array argument can be any class instance that can be used as the like
  argument in NumPy (see `NEP 35
  <https://numpy.org/neps/nep-0035-array-creation-dispatch-with-array-function.html>`_).
  enabling support for CuPy through, for example, the creation of a CuPy CPU
  compressor.
  By :user:`Mads R. B. Kristensen <madsbk>` :issue:`934`.
  • Remove support for Python 3.7 in concert with NumPy dependency. By :user:Davis Bennett &lt;d-v-b&gt; :issue:1067.

  • Zarr v3: add support for the default root path rather than requiring that all API users pass an explicit path. By :user:Gregory R. Lee &lt;grlee77&gt; :issue:1085, :issue:1142.

Bug fixes


* Remove/relax erroneous &quot;meta&quot; path check (**regression**).
  By :user:`Gregory R. Lee &lt;grlee77&gt;` :issue:`1123`.

* Cast all attribute keys to strings (and issue deprecation warning).
  By :user:`Mattia Almansi &lt;malmans2&gt;` :issue:`1066`.

&lt;/tr&gt;&lt;/table&gt; 
</code></pre>
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>

<ul>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/61af678bd86ce62f9d1b3c4f922e28bc60e47f7e"><code>61af678</code></a> 2.13.2: another fix for the conda-forge tests (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1146">#1146</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/7c9c9edfeef37dacad1c3af222bfa44ff81102d4"><code>7c9c9ed</code></a> Bump pytest-doctestplus from 0.12.0 to 0.12.1 (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1145">#1145</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/814017ddc7aa8255d9343246288104a9ade05f07"><code>814017d</code></a> 2.13.1: generate fixture/meta in conda tests (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1143">#1143</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/bc13b7f93a353d936c196053757ec05ab282cf0b"><code>bc13b7f</code></a> Prepare 2.13.0 release (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1133">#1133</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/363282097b146ff6575b0e8353a407b7b7a187cb"><code>3632820</code></a> Create codeql-analysis.yml (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1127">#1127</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/718ee1338319a32056a2395e54517644d727ad16"><code>718ee13</code></a> empty path is fine after update to allow path=None for zarr v3 (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1142">#1142</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/505810c44108328ec5732ad8460057f016994fd3"><code>505810c</code></a> Use generator instead of list comprehension (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1139">#1139</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/9f4e3b18efa2f6fe9496ccf54cad3993cc22fd4a"><code>9f4e3b1</code></a> Bump fasteners from 0.17.3 to 0.18 (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1137">#1137</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/77c1f723199cfa0f2871f6fd30bbe045a948456f"><code>77c1f72</code></a> Fix numcodecs dependency (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1135">#1135</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/4d68015e57e6cdbd9550a6447a142f77abacc85f"><code>4d68015</code></a> Consistent Python versions (<a href="https://github-redirect.dependabot.com/zarr-developers/zarr-python/issues/1136">#1136</a>)</li>
<li>Additional commits viewable in <a href="https://github.com/zarr-developers/zarr-python/compare/v2.12.0...v2.13.2">compare view</a></li>
</ul>
</details>

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dependabot[bot] commented 2 years ago

Superseded by #38.