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John-P / wsic

Whole Slide image (WSI) conversion for brightfield histology images
MIT License
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⬆️ Bump zarr from 2.13.3 to 2.14.2 #81

Closed dependabot[bot] closed 1 year ago

dependabot[bot] commented 1 year ago

Bumps zarr from 2.13.3 to 2.14.2.

Release notes

Sourced from zarr's releases.

v2.14.2

See release notes https://zarr.readthedocs.io/en/stable/release.html#release-2-14-2

v2.14.1

See release notes https://zarr.readthedocs.io/en/stable/release.html#release-2-14-1

v2.14.0

See release notes https://zarr.readthedocs.io/en/stable/release.html#release-2-14-0

and the lovely new documentation theme at https://zarr.readthedocs.io/ !

v2.13.6

See release notes https://zarr.readthedocs.io/en/stable/release.html#release-2-13-6

v2.13.5

See release notes https://zarr.readthedocs.io/en/stable/release.html#release-2-13-5

v2.13.4

See release notes https://zarr.readthedocs.io/en/stable/release.html#release-2-13-4

Special thanks to Outreachy participants for contributing to most of the maintenance PRs. Please read the blog post summarising the contribution phase and welcoming new Outreachy interns: https://zarr.dev/blog/welcoming-outreachy-2022-interns/

Changelog

Sourced from zarr's changelog.

2.14.2

Bug fixes


* Ensure ``zarr.group`` uses writeable mode to fix issue with :issue:`1304`.
  By :user:`Brandur Thorgrimsson <swordcat>` :issue:`1354`.

.. _release_2.14.1:


2.14.1


Documentation

  • Fix API links. By :user:Josh Moore <joshmoore> :issue:1346.

  • Fix unit tests which prevented the conda-forge release. By :user:Josh Moore <joshmoore> :issue:1348.

.. _release_2.14.0:

2.14.0

Major changes


* Improve Zarr V3 support, adding partial store read/write and storage transformers.
  Add new features from the `v3 spec <https://zarr-specs.readthedocs.io/en/latest/core/v3.0.html>`_:
    * storage transformers
    * `get_partial_values` and `set_partial_values`
    * efficient `get_partial_values` implementation for `FSStoreV3`
    * sharding storage transformer
  By :user:`Jonathan Striebel <jstriebel>`; :issue:`1096`, :issue:`1111`.

    

  • N5 nows supports Blosc.
Remove warnings emitted when using N5Store or N5FSStore with a blosc-compressed array.
By :user:Davis Bennett &lt;d-v-b&gt;; :issue:1331.
    • 



Bug fixes



* Allow reading utf-8 encoded json files
  By :user:`Nathan Zimmerberg &lt;nhz2&gt;` :issue:`1308`.

* Ensure contiguous data is give to ``FSStore``. Only copying if needed.
&lt;/tr&gt;&lt;/table&gt; 
</code></pre>
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>

<ul>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/5ece3e6971595feec5fce37ce801dd54e961c728"><code>5ece3e6</code></a> Ensure <code>zarr.group</code> uses writable mode (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/1354">#1354</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/d7d88158c5f4e61d926675f2af9df66e7848bb68"><code>d7d8815</code></a> Fix N5Store dtype wrong behavior  (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/1340">#1340</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/c3750302f71ebb0b1506db05815b38c2c097c3de"><code>c375030</code></a> Bump numpy from 1.24.1 to 1.24.2 (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/1350">#1350</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/87c48d80c33ebe92661a05e981cce48b11b5c66f"><code>87c48d8</code></a> Fix 2.14.0 redirects (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/1346">#1346</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/76fce142174b4b57e4fb0fd8141d7515aae81dcf"><code>76fce14</code></a> Generate fixture for <a href="https://redirect.github.com/zarr-developers/zarr-python/issues/1312">#1312</a> if it is missing (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/1348">#1348</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/4e8b84b46937ba14f9cf818065740e95a2a2b554"><code>4e8b84b</code></a> Bump redis from 4.4.2 to 4.5.1 (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/1344">#1344</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/277e4b200edd275e991b321a4d735859ffd555a9"><code>277e4b2</code></a> Prepare 2.14 changelog (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/1337">#1337</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/280d9695990b73153127083dd640bcb5a69e8f8f"><code>280d969</code></a> Allow reading utf-8 encoded json files  (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/1312">#1312</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/4dc6f1f5046708648b5e6b82d0a64a24d1a40566"><code>4dc6f1f</code></a> changed documentation theme to pydata_sphinx_theme (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/1242">#1242</a>)</li>
<li><a href="https://github.com/zarr-developers/zarr-python/commit/e9fb1f33f339d046e41a76fee46be07d8e4f39a4"><code>e9fb1f3</code></a> remove blosc warnings from n5 compressor handling (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/1331">#1331</a>)</li>
<li>Additional commits viewable in <a href="https://github.com/zarr-developers/zarr-python/compare/v2.13.3...v2.14.2">compare view</a></li>
</ul>
</details>

<br />



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codecov[bot] commented 1 year ago

Codecov Report

Merging #81 (4b2ea2f) into dev (743faf1) will not change coverage. The diff coverage is n/a.

@@           Coverage Diff           @@
##              dev      #81   +/-   ##
=======================================
  Coverage   90.54%   90.54%           
=======================================
  Files          14       14           
  Lines        1862     1862           
=======================================
  Hits         1686     1686           
  Misses        176      176

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