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JohnsonHsieh / iNEXT

R package for interpolation and extrapolation
https://JohnsonHsieh.github.com/iNEXT
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Unclassified metagenomic reads: whether to include in iNEXT input #61

Open ursadhip opened 3 years ago

ursadhip commented 3 years ago

Hello

I am new to rarefaction analysis concept. I have ~40000 metagenomic reads, among which ~2000 got classified as virus OTUs.

So my question is, whether to include those unclassified reads in the iNEXT input for rarefaction analysis?

Please suggest me in this regard.