duaghk
commented
8 months ago Dear ChristianDina. I'm not the author of this tools, but I think can give you some advise. The easist way is use docker or singularity with ubuntu:18.04(bionic) images. and U can install rpy2 using this command.(with other dependency)
apt update && apt upgrade -y
apt install -y \
git \
wget \
python2.7-dev \
python-pip \
r-base \
r-cran-rcppeigen \
r-cran-mvtnorm \
r-cran-gbj \
python-pandas \
python-rpy2 \
python-scipy \
python-numpyI hope this will be helpful.
Hi, seems I have a problem with r-base ang r-gbj on one side and r-base and rpy2 on the other side . Last error I have is
Could not solve for environment specs The following packages are incompatible └─ rpy2 is installable with the potential options ├─ rpy2 [2.7.6|2.7.8] would require │ └─ r 3.2.2 , which does not exist (perhaps a missing channel); ├─ rpy2 [2.7.0|2.7.6|2.7.8|2.8.1|2.8.5] would require │ └─ python 3.4 , which does not exist (perhaps a missing channel); ├─ rpy2 [2.7.8|2.8.1|2.8.5|2.8.6] would require │ ├─ r 3.3.1 , which requires │ │ └─ r-base [3.3.1 |3.3.1 6], which requires │ │ └─ icu 54. , which does not exist (perhaps a missing channel); │ └─ r-base [3.3.1 |3.3.2 |3.4.1 ], which cannot be installed (as previously explained); ├─ rpy2 2.7.0 would require │ └─ r-base 3.2.2 , which does not exist (perhaps a missing channel); ├─ rpy2 2.7.0 would require │ └─ python 3.3* , which does not exist (perhaps a missing channel); ├─ rpy2 2.8.6 would require
If I change R-base, then GBJ will ask me to have r-base at 4.