JonJala / mtag

Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
GNU General Public License v3.0
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Termination of analysis #177

Open Nalinikanta7 opened 1 year ago

Nalinikanta7 commented 1 year ago

I got the following result while running mtag. Kindly help me in this regard.

2023/03/24/11:14:00 AM Beginning MTAG analysis... 2023/03/24/11:14:00 AM MTAG will use the Z column for analyses. 2023/03/24/11:14:00 AM invalid literal for int() with base 10: 'n' Traceback (most recent call last): File "./mtag.py", line 1577, in mtag(args) File "./mtag.py", line 1343, in mtag DATA_U, DATA, args = load_and_merge_data(args) File "./mtag.py", line 257, in load_and_merge_data args.n_list = [int(x) for x in args.n_value.split(',')] ValueError: invalid literal for int() with base 10: 'n' 2023/03/24/11:14:00 AM Analysis terminated from error at Fri Mar 24 11:14:00 2023 2023/03/24/11:14:00 AM Total time elapsed: 0.0s

JonJala commented 1 year ago

What does your invocation of MTAG look like? (As in what parameters are you passing?). It looks like you're passing in an 'n' when it expects a number, based on the error that was returned.

On Fri, Mar 24, 2023, 1:46 AM NKC_IARI @.***> wrote:

I got the following result while running mtag. Kindly help me in this regard.

2023/03/24/11:14:00 AM Beginning MTAG analysis... 2023/03/24/11:14:00 AM MTAG will use the Z column for analyses. 2023/03/24/11:14:00 AM invalid literal for int() with base 10: 'n' Traceback (most recent call last): File "./mtag.py", line 1577, in mtag(args) File "./mtag.py", line 1343, in mtag DATA_U, DATA, args = load_and_merge_data(args) File "./mtag.py", line 257, in load_and_merge_data args.n_list = [int(x) for x in args.n_value.split(',')] ValueError: invalid literal for int() with base 10: 'n' 2023/03/24/11:14:00 AM Analysis terminated from error at Fri Mar 24 11:14:00 2023 2023/03/24/11:14:00 AM Total time elapsed: 0.0s

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Nalinikanta7 commented 1 year ago

Can you provide the example data link as the data provided here through the link cannot be unzipped?

JonJala commented 1 year ago

I'm sorry, but I don't understand what you mean. What data and what link?