JonathanShor / DoubletDetection

Doublet detection in single-cell RNA-seq data.
https://doubletdetection.readthedocs.io/en/stable/
MIT License
87 stars 23 forks source link

Remove dependency louvain and leidenalg #159

Open dmalzl opened 2 months ago

dmalzl commented 2 months ago

I am trying to install doubletdetection but fail to do so due to an error while building the louvain dependency. From what I get from the code it seems that these algorithms are anyway handled by scanpy, which should also install all the necessary dependencies and in my case installs just fine. Thus my question is if it is even necessary to have louvain and leidenalg in the dependencies when they are anyway handled somewhere else

yuanjianwen-gif commented 2 months ago

same problem, fail with installing louvain