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JonathanShor / DoubletDetection

Doublet detection in single-cell RNA-seq data.
https://doubletdetection.readthedocs.io/en/stable/
MIT License
87 stars 23 forks source link

Run on command line #74

Closed adamgayoso closed 5 years ago

adamgayoso commented 6 years ago

This would be nice for R/Matlab users, though isn't completely necessary.

JonathanShor commented 6 years ago

Output will be a csv of the labels.

adamgayoso commented 5 years ago

Closing this as R users can do something like this:

https://github.com/kostkalab/scds_manuscript/blob/master/R/run_dblDetection.R