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JonnyTran / OpenOmics

A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
https://openomics.readthedocs.io/en/latest/
MIT License
31 stars 13 forks source link

Reviewer 1 - Installation #161

Closed ksielemann closed 3 years ago

ksielemann commented 3 years ago

Description

Installation with pip install openomics worked fine on the Linux system I am using. However, using my windows computer, I got the following error: error: Microsoft Visual C++ 14.0 is required, but I cannot find this in the requirements

from openomics import MultiOmics results in the "UserWarning: Tensorflow not installed; ParametricUMAP will be unavailable"

JonnyTran commented 3 years ago

Hi @ksielemann. I think this issue could be due to the old requirements.txt that required UMAP, which somehow needs tensorflow dependency. So, since v0.8.5, I've fixed it by removing UMAP as it wasn't used in openomics.

Can you check if your github repository is updated to the latest master branch, and pip install --upgrade ./ -e to update if it isn't? Let me know if the warning still persists when importing the package on your Windows OS.

ksielemann commented 3 years ago

Thanks! This works great now.