JonnyTran / OpenOmics

A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
https://openomics.readthedocs.io/en/latest/
MIT License
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Bug: MalaCards integration not working because CSV is not working #188

Open jamesbraza opened 7 months ago

jamesbraza commented 7 months ago

Description

The MalaCards object throws an Exception when instantiating it:

Exception: Unable to download file at http://zdzlab.einstein.yu.edu/1/hedd/download.action.php?filename=DataDownload/MalaCards.csv. Please try manually downloading the files.
<urlopen error Unable to open any source! Exceptions were {'http://zdzlab.einstein.yu.edu/1/hedd/download.action.php?filename=DataDownload/MalaCards.csv': <HTTPError 404: 'Not Found'>, 'http://www.astropy.org/astropy-data/download.action.php?filename=DataDownload/MalaCards.csv': <HTTPError 404: 'Not Found'>}>

What I Did

from openomics.database.disease import MalaCards
MalaCards()

This doesn't work because http://zdzlab.einstein.yu.edu/1/hedd/download.action.php?filename=DataDownload/MalaCards.csv is throwing a 404 error.

jamesbraza commented 7 months ago

Looks like a working URL is https://zdzlab.einsteinmed.edu/1/hedd/DataDownload/MalaCards.csv (without the yu)