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JoseBarbero / CamPype

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MLST error #142

Open sdvjucw opened 15 hours ago

sdvjucw commented 15 hours ago

I was running Campype using my own Vibrio datasets, including 1 V. parahaemolyticus, 6 V. alginolyticus, and 17 V. diabolicus.

Because V. alginolyticus and V. diabolicus generate only 4 columns of house keeping gene in MLST, but V. parahaemolytiucs generate 7 columns. So, there is a error in generating uneven column of this file.

Then I tried to skip the process, including deactivate mlst analysis in config file, changing campype.py program file. I also tried adding reference genome, and even change species name in the input_files, but none of those attempts work. campype.1.log campype.2.log MLST(1).txt

ireneortega commented 9 hours ago

We apologize for the error and we are trying to solve it as soon as possible as also happened here https://github.com/JoseBarbero/CamPype/issues/140#issuecomment-2413003602. We will get back to you when solved, including the error in the report. Sorry for the inconveniences

sdvjucw commented 8 hours ago

Thanks very mcuh for your reply!! I am looking forward to when when you solve the problem.