Week 2 Feedback

[schidambaran]

Python script with all code for the assignment

Exercise	Points Possible	Grade
Code to simulate read coverage	1.5	1.5
Code to calculate Poisson and Normal distribution expectations	0.5	0.25
Code to count 0 coverage occurences	0.5	0.5
Code to plot ex1_*_cov.png	0.5	0.5
Code to generate the edges of the de Bruijn graph	1	1

README.md file with answers to questions in the assignment

Exercise	Points Possible	Grade
Answer to question in Step 1.1	0.5	0.5
Answer to questions in Steps 1.3 - 1.5	1	1
Answer to question in Step 2.4	0.5	0.5
Answer to question in Step 2.5	0.5	0
Answer to question in Step 2.6	0.5	0
Answer to question in Step 3.1	0.5	0.5
Answer to question in Step 3.2	0.5	0.5

Figures for exercises 1 and 2

Exercise	Points Possible	Grade
ex1_3x_cov.png clearly labelled	0.5	0.5
ex1_10x_cov.png clearly labelled	0.5	0.5
ex1_30x_cov.png clearly labelled	0.5	0.5
ex2_digraph.png (the output of dot)	0.5	0.5

Total: 8.75/10

Please upload your assignment for week 2.

Great work! For full credit:

• Step 1.2: I think your normal distribution is not visible on your plots because you need to multiply the entire PDF by the length of the genome, not just the scale parameter (line 32 in your Python script).
• Provide answers to the questions in steps 2.5 and 2.6

[Joseph-Dixon1]

I've uploaded it now

[schidambaran]

Your grade has been updated!