Week 5 Feedback

[schidambaran]

Please submit your assignment for week 5.

Bash script that performs read alignment and variant calling/filtering/annotation

3/3

Exercise	Points Possible	Grade
Read alignment	1	1
Variant calling	1	1
Filtering and annotation	1	1

VCF file containing the first 100 lines of your filtered/annotated VCF from Step 2.4

1/1

Python script that runs exploratory analysis of VCF from Step 2.4

3.5/4

Exercise	Points Possible	Grade
Code to parse VCF file	2	1.5
Code to produce multi-panel plot	2	2

Nicely formatted and labeled multi-panel plot showing summaries of exploratory analysis

1.5/2

Total: 9/10

Good work! For full credit:

• Exercise 3: Please make sure all the text on your graphs is readable.
• Steps 3.2: I think you're not seeing anything on your genotype quality graph because the variable GQ is never defined in your script (line 22), so you never reach line 23.

[Joseph-Dixon1]

Hello I submitted

[schidambaran]

Your grade has been updated!