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Jtrachsel
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gifrop
Genomic Islands From Roary Pangenomes
GNU General Public License v2.0
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Overhaul clustering
#3
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Jtrachsel
closed
3 years ago
Jtrachsel
commented
3 years ago
Splits clustering into its own script.
Overhauls clustering, now uses Overlap index (Simpson similarity index) for the first 3 levels and Jaccard similarity index for the final level.
de-replicates identical elements (islands) before clustering. This should allow clustering of larger datasets.
Adds two new r package reqs (proxy, digest).