It seems likely that this is due to the index being created before the residues are filtered for non-standard amino acids. If so, the ideal solution would be for the index to be sequential with respect to the final, filtered sequence, while maintaining the integrity of the PDB labels.
We've run into an error
ValueError: Index 70 not in model_res_label_by_index
when attempting to make a prediction for the PDB file5yclA
Note: the index skips from
69
to71
.It seems likely that this is due to the index being created before the residues are filtered for non-standard amino acids. If so, the ideal solution would be for the index to be sequential with respect to the final, filtered sequence, while maintaining the integrity of the PDB labels.