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JuliaCloud / XMLDict.jl

XMLDict implements a simple Associative interface for XML documents.
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XMLError: internal error: Huge input lookup from XML parser #25

Closed KwatMDPhD closed 2 years ago

KwatMDPhD commented 2 years ago

What's going on?

mattBrzezinski commented 2 years ago

Do you have an example of what is broken? What version you are using of the package and Julia?

KwatMDPhD commented 2 years ago

1.7.2

http://www.gsea-msigdb.org/gsea/msigdb/download_file.jsp?filePath=/msigdb/release/7.5.1/msigdb_v7.5.1.xml

Thank you very much.

mattBrzezinski commented 2 years ago

1.7.2

http://www.gsea-msigdb.org/gsea/msigdb/download_file.jsp?filePath=/msigdb/release/7.5.1/msigdb_v7.5.1.xml

Thank you very much.

This is not a public file. Can you post what the error is that you're getting in Julia?

KwatMDPhD commented 2 years ago

Could you please try downloading the only .xml listed here? http://www.gsea-msigdb.org/gsea/downloads.jsp

You can use "kwatme8 at gmail. com"

KwatMDPhD commented 2 years ago
Screen Shot 2022-02-17 at 13 27 20
mattBrzezinski commented 2 years ago

This is a problem stemming in EzXML.jl, most likely because the file is too large and needs to be partitioned down.

KwatMDPhD commented 2 years ago

Is there anyway to read this big xml?

mattBrzezinski commented 2 years ago

Here's a list of other XML packages in Julia.

KwatMDPhD commented 2 years ago

Thank you for looking into this.