[PRE REVIEW]: Extending JumpProcess.jl for fast point process simulation with time-varying intensities

[whedon]

Submitting author: @gzagatti (Guilherme Augusto Zagatti) Repository: https://github.com/SciML/JumpProcesses.jl Version: Editor: @matbesancon Reviewers: @gdalle Managing EiC: Mathieu Besançon

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Thanks for submitting your paper to JCON @gzagatti. Currently, there isn't an JCON editor assigned to your paper.

The author's suggestion for the handling editor is @matbesancon.

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[whedon]

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

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Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

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For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

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[matbesancon]

@whedon generate pdf from branch juliacon2023

[whedon]

Attempting PDF compilation from custom branch juliacon2023. Reticulating splines etc...

[whedon]

PDF failed to compile for issue #132 with the following error:

 Can't find any papers to compile :-(

[whedon]

Software report (experimental):

github.com/AlDanial/cloc v 1.88  T=0.13 s (707.3 files/s, 95448.9 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Julia                           68           1256            703           7287
Markdown                        13            601              0           2415
YAML                             8             12              8            183
TOML                             3              5              0             67
TeX                              1              0              0             13
-------------------------------------------------------------------------------
SUM:                            93           1874            711           9965
-------------------------------------------------------------------------------

Statistical information for the repository 'b30a4e14d01c08ed7f43aea7' was
gathered on 2023/08/17.
No commited files with the specified extensions were found.

[whedon]

PDF failed to compile for issue #132 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'stackengine.sty' from line
  '! LaTeX Error: File `stackengine.sty' not found.'
Latexmk: Missing input file: 'stackengine.sty' from line
  '! LaTeX Error: File `stackengine.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[matbesancon]

@gzagatti not sure what stackengine is but you'll probably need the sty library added to the repo

[gzagatti]

@whedon commands

[whedon]

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[gzagatti]

@whedon generate pdf from commit 68f25fa51b02920410600cd48e0a401f3454f787

[whedon]

PDF failed to compile for issue #132 with the following error:

 Can't find any papers to compile :-(

[matbesancon]

I think your commit needs to be on the same repo, not a fork

[gzagatti]

Ok, I don't have write access to the main repo. That's why I've opened a PR to get it merged to the paper branch.

I'm tagging @isaacsas who is the library maintainer so that he is aware of the review process here.

[isaacsas]

I merged your PR.

[gzagatti]

@whedon generate pdf from branch juliacon2023

[whedon]

Attempting PDF compilation from custom branch juliacon2023. Reticulating splines etc...

[whedon]

PDF failed to compile for issue #132 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'subfig.sty' from line
  '! LaTeX Error: File `subfig.sty' not found.'
Latexmk: Missing input file: 'subfig.sty' from line
  '! LaTeX Error: File `subfig.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[gzagatti]

@matbesancon compilation failed again because of the missing subfig.sty package.

Would it be possible to share the docker container (or at least the compilation env) of the LaTex compiler such that I can ensure that the repo will build against it?

[matbesancon]

unfortunately the compilation env is a bit opaque, the easiest for now is to include the package you are missing

[gzagatti]

@whedon generate pdf from branch juliacon2023

[whedon]

Attempting PDF compilation from custom branch juliacon2023. Reticulating splines etc...

[whedon]

PDF failed to compile for issue #132 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'multirow.sty' from line
  '! LaTeX Error: File `multirow.sty' not found.'
Latexmk: Missing input file: 'multirow.sty' from line
  '! LaTeX Error: File `multirow.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[gzagatti]

@whedon generate pdf from branch juliacon2023

[whedon]

Attempting PDF compilation from custom branch juliacon2023. Reticulating splines etc...

[whedon]

PDF failed to compile for issue #132 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'mhsetup.sty' from line
  '! LaTeX Error: File `mhsetup.sty' not found.'
Latexmk: Missing input file: 'mhsetup.sty' from line
  '! LaTeX Error: File `mhsetup.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[gzagatti]

@whedon generate pdf from branch juliacon2023

[whedon]

Attempting PDF compilation from custom branch juliacon2023. Reticulating splines etc...

[whedon]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[matbesancon]

@gzagatti let us know when the paper is ready to continue with the submission

[gzagatti]

@matbesancon it's all good to proceed. The paper compiled correctly.

[matbesancon]

@whedon add @gdalle as reviewer

[whedon]

You need to assign an editor first.

[gzagatti]

@matbesancon it looks like your previous command failed, as an editor needs to be assigned first. Do I need to take any action?

[matbesancon]

@whedon add @matbesancon as editor

[whedon]

I'm sorry human, I don't understand that. You can see what commands I support by typing:

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[matbesancon]

@whedon set @matbesancon as editor

[whedon]

I'm sorry human, I don't understand that. You can see what commands I support by typing:

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[matbesancon]

@whedon commands

[whedon]

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[matbesancon]

@whedon assign @matbesancon as editor

[whedon]

OK, the editor is @matbesancon

[matbesancon]

@whedon add @gdalle as reviewer

[whedon]

OK, @gdalle is now a reviewer

[matbesancon]

@whedon start review

[whedon]

OK, I've started the review over in https://github.com/JuliaCon/proceedings-review/issues/133.