[PRE REVIEW]: Pigeons.jl: Distributed sampling from intractable distributions

[whedon]

Submitting author: @nikola-sur (Nikola Surjanovic) Repository: https://github.com/Julia-Tempering/Pigeons-Paper Version: Editor: @pitsianis Reviewers: @nsailor, @georgebisbas Managing EiC: Mathieu Besançon

Author instructions

Thanks for submitting your paper to JCON @nikola-sur. Currently, there isn't an JCON editor assigned to your paper.

The author's suggestion for the handling editor is @pitsianis.

@nikola-sur if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JCON and may be suitable for this submission (please start at the bottom of the list).

Editor instructions

The JCON submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type:

@whedon commands

[nikola-sur]

@miguelbiron Any insight into how to view the log? (The paper compiles fine locally.)

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

Hi @pitsianis -- I'm running out of ideas here. Do you know if there's a way to print the log to debug the error?

[pitsianis]

I had requested the same thing https://github.com/JuliaCon/proceedings-review/issues/126#issuecomment-1784690548

@arfon and/or @xuanxu, please also check the logs on this submission and enlighten us. Perhaps if we had the compilation script, we would not need to bother you this often 😄

[miguelbiron]

thank you! I'm gonna keep trying other stuff in the meantime.

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

Ok so i setup the GH action and at least I can produce an error...

it doesn't look related to pdflatex so maybe not the same as the one we see here.

[arfon]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[arfon]

As I mentioned over in https://github.com/JuliaCon/proceedings-review/issues/126#issuecomment-1784690548, we're in the process of moving to a new bot for this stuff. I'm afraid the current functionality of Whedon is essentially frozen in time right now (no new features).

Did you verify that you can run the build script yourself as documented here? https://github.com/JuliaCon/JuliaConSubmission.jl?tab=readme-ov-file#build-process

[pitsianis]

@miguelbiron @nikola-sur replace the paper/ directory content with the corresponding one from here, it should work. Then substitute back, file by file, your sources. If the error is in paper.tex, do a "binary search" by commenting out parts of your text. This is the old-fashioned, binary debugging until we move to the better editorial bot.

[miguelbiron]

@arfon @pitsianis That sounds like what we have basically done so far with @nikola-sur . We could try again I guess.

I actually was able to install whedon cmd line utils on my computer and could successfully compile our paper: 10.21105.jcon.00136.pdf. So all the evidence points to the current deployment of the @ whedon bot having a corrupt texlive installation.

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: Initialization file '.latexmkrc' gave an error:
     syntax error at (eval 9) line 7, near ")
     system"

Latexmk: Stopping because of problem with rc file
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running '! pdflatex -halt-on-error  -recorder  "paper.tex" | grep -A3 '^!''
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running '! pdflatex -halt-on-error  -recorder  "paper.tex" | cat'
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex -halt-on-error  -recorder  "paper.tex" 1>&2'
------------
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./paper.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 22 language(s) loaded.
(./juliacon.cls (/app/.texlive/texmf-dist/tex/latex/psnfss/helvet.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/keyval.sty))
Document Class: juliacon 
(/app/.texlive/texmf-dist/tex/latex/base/latexsym.sty)
(/app/.texlive/texmf-dist/tex/latex/url/url.sty)
(/app/.texlive/texmf-dist/tex/latex/base/inputenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/utf8.def
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def)) (./journal_dat.tex)
(/app/.texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/app/.texlive/texmf-dist/tex/latex/tools/bm.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/app/.texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/app/.texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/app/.texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/app/.texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/app/.texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (./jlcode.sty

-- Package: `jlcode' 2.1 <2018/03/06> --
(/app/.texlive/texmf-dist/tex/latex/listings/listings.sty
(/app/.texlive/texmf-dist/tex/latex/listings/lstmisc.sty)
(/app/.texlive/texmf-dist/tex/latex/listings/listings.cfg))
(/app/.texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))
(/app/.texlive/texmf-dist/tex/latex/base/textcomp.sty
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(/app/.texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
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(/app/.texlive/texmf-dist/tex/latex/caption/caption.sty
(/app/.texlive/texmf-dist/tex/latex/caption/caption3.sty)

Package caption Warning: Unsupported document class (or package) detected,
(caption)                usage of the caption package is not recommended.
See the caption package documentation for explanation.

)) (./shortex.sty (./xifthen.sty
(/app/.texlive/texmf-dist/tex/latex/base/ifthen.sty) (./ifmtarg.sty))
(/app/.texlive/texmf-dist/tex/generic/xstring/xstring.sty
(/app/.texlive/texmf-dist/tex/generic/xstring/xstring.tex))
(/app/.texlive/texmf-dist/tex/latex/tools/xspace.sty)
(/app/.texlive/texmf-dist/tex/latex/amsfonts/eucal.sty) (./dsfont.sty)
(./nicefrac.sty) (/app/.texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/app/.texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (./bbm.sty)
(./mathtools.sty (./mhsetup.sty)) (./cleveref.sty) (./crossreftools.sty)
(./import.sty) (./subfiles.sty
! Undefined control sequence.
l.30 \ExplSyntaxOn

!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on paper.log.
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

Finally have some output :sob::sob::sob::sob:

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex -halt-on-error  -recorder  "paper.tex" 1>&2'
------------
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./paper.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 22 language(s) loaded.
(./juliacon.cls (/app/.texlive/texmf-dist/tex/latex/psnfss/helvet.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/keyval.sty))
Document Class: juliacon 
(/app/.texlive/texmf-dist/tex/latex/base/latexsym.sty)
(/app/.texlive/texmf-dist/tex/latex/url/url.sty)
(/app/.texlive/texmf-dist/tex/latex/base/inputenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/utf8.def
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def)) (./journal_dat.tex)
(/app/.texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/app/.texlive/texmf-dist/tex/latex/tools/bm.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/app/.texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/app/.texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/app/.texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/app/.texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/app/.texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (./jlcode.sty

-- Package: `jlcode' 2.1 <2018/03/06> --
(/app/.texlive/texmf-dist/tex/latex/listings/listings.sty
(/app/.texlive/texmf-dist/tex/latex/listings/lstmisc.sty)
(/app/.texlive/texmf-dist/tex/latex/listings/listings.cfg))
(/app/.texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))
(/app/.texlive/texmf-dist/tex/latex/base/textcomp.sty
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(/app/.texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/app/.texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/app/.texlive/texmf-dist/tex/latex/eurosym/eurosym.sty)
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def))
(/app/.texlive/texmf-dist/tex/latex/tools/calc.sty)
(/app/.texlive/texmf-dist/tex/latex/base/t1cmtt.fd))
(/app/.texlive/texmf-dist/tex/latex/preprint/authblk.sty)
(/app/.texlive/texmf-dist/tex/latex/caption/caption.sty
(/app/.texlive/texmf-dist/tex/latex/caption/caption3.sty)

Package caption Warning: Unsupported document class (or package) detected,
(caption)                usage of the caption package is not recommended.
See the caption package documentation for explanation.

)) (./expl3.sty (/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3-code.tex

! Package expl3 Error: Mismatched expl3 files detected.

See the expl3 package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              

l.105 \next

!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on paper.log.
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex -halt-on-error  -recorder  "paper.tex" 1>&2'
------------
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./paper.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 22 language(s) loaded.
(./juliacon.cls (/app/.texlive/texmf-dist/tex/latex/psnfss/helvet.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/keyval.sty))
Document Class: juliacon 
(/app/.texlive/texmf-dist/tex/latex/base/latexsym.sty)
(/app/.texlive/texmf-dist/tex/latex/url/url.sty)
(/app/.texlive/texmf-dist/tex/latex/base/inputenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/utf8.def
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def)) (./journal_dat.tex)
(/app/.texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/app/.texlive/texmf-dist/tex/latex/tools/bm.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics/graphicx.sty
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(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/app/.texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/app/.texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
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(/app/.texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
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(/app/.texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
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-- Package: `jlcode' 2.1 <2018/03/06> --
(/app/.texlive/texmf-dist/tex/latex/listings/listings.sty
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(/app/.texlive/texmf-dist/tex/latex/preprint/authblk.sty)
(/app/.texlive/texmf-dist/tex/latex/caption/caption.sty
(/app/.texlive/texmf-dist/tex/latex/caption/caption3.sty)

Package caption Warning: Unsupported document class (or package) detected,
(caption)                usage of the caption package is not recommended.
See the caption package documentation for explanation.

)) (/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
(/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3-code.tex)
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(./xifthen.sty (/app/.texlive/texmf-dist/tex/latex/base/ifthen.sty)
(./ifmtarg.sty)) (/app/.texlive/texmf-dist/tex/generic/xstring/xstring.sty
(/app/.texlive/texmf-dist/tex/generic/xstring/xstring.tex))
(/app/.texlive/texmf-dist/tex/latex/tools/xspace.sty)
(/app/.texlive/texmf-dist/tex/latex/amsfonts/eucal.sty) (./dsfont.sty)
(./nicefrac.sty) (/app/.texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/app/.texlive/texmf-dist/tex/latex/amsmath/amstext.sty
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(/app/.texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (./bbm.sty)
(./mathtools.sty (./mhsetup.sty)) (./cleveref.sty) (./crossreftools.sty)
(./import.sty) (./subfiles.sty)
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algpseudocode.sty
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algorithmicx.sty
Document Style algorithmicx 1.2 - a greatly improved `algorithmic' style
)
Document Style - pseudocode environments for use with the `algorithmicx' style
) (/app/.texlive/texmf-dist/tex/latex/algorithms/algorithm.sty
(/app/.texlive/texmf-dist/tex/latex/float/float.sty))

! LaTeX Error: File `multirow.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

Enter file name: 
! Emergency stop.
<read *> 

l.32 \usepackage
                {wrapfig} % figures wrapped into the text^^M
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on paper.log.
===========Latexmk: Missing input file: 'multirow.sty' from line
  '! LaTeX Error: File `multirow.sty' not found.'
Latexmk: Missing input file: 'multirow.sty' from line
  '! LaTeX Error: File `multirow.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex -halt-on-error  -recorder  "paper.tex" 1>&2'
------------
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./paper.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 22 language(s) loaded.
(./juliacon.cls (/app/.texlive/texmf-dist/tex/latex/psnfss/helvet.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/keyval.sty))
Document Class: juliacon 
(/app/.texlive/texmf-dist/tex/latex/base/latexsym.sty)
(/app/.texlive/texmf-dist/tex/latex/url/url.sty)
(/app/.texlive/texmf-dist/tex/latex/base/inputenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/utf8.def
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def)) (./journal_dat.tex)
(/app/.texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/app/.texlive/texmf-dist/tex/latex/tools/bm.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/app/.texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
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(/app/.texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/app/.texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
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-- Package: `jlcode' 2.1 <2018/03/06> --
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(/app/.texlive/texmf-dist/tex/latex/caption/caption.sty
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Package caption Warning: Unsupported document class (or package) detected,
(caption)                usage of the caption package is not recommended.
See the caption package documentation for explanation.

)) (/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
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(/app/.texlive/texmf-dist/tex/latex/amsmath/amstext.sty
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(./mathtools.sty (./mhsetup.sty)) (./cleveref.sty) (./crossreftools.sty)
(./import.sty) (./subfiles.sty)
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algpseudocode.sty
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algorithmicx.sty
Document Style algorithmicx 1.2 - a greatly improved `algorithmic' style
)
Document Style - pseudocode environments for use with the `algorithmicx' style
) (/app/.texlive/texmf-dist/tex/latex/algorithms/algorithm.sty
(/app/.texlive/texmf-dist/tex/latex/float/float.sty)) (./multirow.sty)

! LaTeX Error: File `wrapfig.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

Enter file name: 
! Emergency stop.
<read *> 

l.34 \usepackage
                {microtype} % microtypesetting improvements for latex^^M
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on paper.log.
===========Latexmk: Missing input file: 'wrapfig.sty' from line
  '! LaTeX Error: File `wrapfig.sty' not found.'
Latexmk: Missing input file: 'wrapfig.sty' from line
  '! LaTeX Error: File `wrapfig.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex -halt-on-error  -recorder  "paper.tex" 1>&2'
------------
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./paper.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 22 language(s) loaded.
(./juliacon.cls (/app/.texlive/texmf-dist/tex/latex/psnfss/helvet.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/keyval.sty))
Document Class: juliacon 
(/app/.texlive/texmf-dist/tex/latex/base/latexsym.sty)
(/app/.texlive/texmf-dist/tex/latex/url/url.sty)
(/app/.texlive/texmf-dist/tex/latex/base/inputenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/utf8.def
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def)) (./journal_dat.tex)
(/app/.texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/app/.texlive/texmf-dist/tex/latex/tools/bm.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/app/.texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
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(/app/.texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/app/.texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/app/.texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
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-- Package: `jlcode' 2.1 <2018/03/06> --
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(/app/.texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
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(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def))
(/app/.texlive/texmf-dist/tex/latex/tools/calc.sty)
(/app/.texlive/texmf-dist/tex/latex/base/t1cmtt.fd))
(/app/.texlive/texmf-dist/tex/latex/preprint/authblk.sty)
(/app/.texlive/texmf-dist/tex/latex/caption/caption.sty
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Package caption Warning: Unsupported document class (or package) detected,
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See the caption package documentation for explanation.

)) (/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
(/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3-code.tex)
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(./xifthen.sty (/app/.texlive/texmf-dist/tex/latex/base/ifthen.sty)
(./ifmtarg.sty)) (/app/.texlive/texmf-dist/tex/generic/xstring/xstring.sty
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(/app/.texlive/texmf-dist/tex/latex/tools/xspace.sty)
(/app/.texlive/texmf-dist/tex/latex/amsfonts/eucal.sty) (./dsfont.sty)
(./nicefrac.sty) (/app/.texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/app/.texlive/texmf-dist/tex/latex/amsmath/amstext.sty
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(./mathtools.sty (./mhsetup.sty)) (./cleveref.sty) (./crossreftools.sty)
(./import.sty) (./subfiles.sty)
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algpseudocode.sty
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algorithmicx.sty
Document Style algorithmicx 1.2 - a greatly improved `algorithmic' style
)
Document Style - pseudocode environments for use with the `algorithmicx' style
) (/app/.texlive/texmf-dist/tex/latex/algorithms/algorithm.sty
(/app/.texlive/texmf-dist/tex/latex/float/float.sty)) (./multirow.sty)
(./wrapfig.sty)

! LaTeX Error: File `microtype.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

Enter file name: 
! Emergency stop.
<read *> 

l.35 \usepackage
                {booktabs} % professional quality tables^^M
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on paper.log.
===========Latexmk: Missing input file: 'microtype.sty' from line
  '! LaTeX Error: File `microtype.sty' not found.'
Latexmk: Missing input file: 'microtype.sty' from line
  '! LaTeX Error: File `microtype.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex -halt-on-error  -recorder  "paper.tex" 1>&2'
------------
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./paper.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 22 language(s) loaded.
(./juliacon.cls (/app/.texlive/texmf-dist/tex/latex/psnfss/helvet.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/keyval.sty))
Document Class: juliacon 
(/app/.texlive/texmf-dist/tex/latex/base/latexsym.sty)
(/app/.texlive/texmf-dist/tex/latex/url/url.sty)
(/app/.texlive/texmf-dist/tex/latex/base/inputenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/utf8.def
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def)) (./journal_dat.tex)
(/app/.texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/app/.texlive/texmf-dist/tex/latex/tools/bm.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/app/.texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
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(/app/.texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
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(/app/.texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
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-- Package: `jlcode' 2.1 <2018/03/06> --
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(/app/.texlive/texmf-dist/tex/latex/caption/caption.sty
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Package caption Warning: Unsupported document class (or package) detected,
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See the caption package documentation for explanation.

)) (/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
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(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algpseudocode.sty
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Document Style algorithmicx 1.2 - a greatly improved `algorithmic' style
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! LaTeX Error: File `microtype-pdftex.def' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: def)

Enter file name: 
! Emergency stop.
<read *> 

l.2682 \input{microtype-\MT@engine tex.def}
                                           ^^M
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on paper.log.
===========Latexmk: Missing input file: 'microtype-pdftex.def' from line
  '! LaTeX Error: File `microtype-pdftex.def' not found.'
Latexmk: Missing input file: 'microtype-pdftex.def' from line
  '! LaTeX Error: File `microtype-pdftex.def' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex -halt-on-error  -recorder  "paper.tex" 1>&2'
------------
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./paper.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 22 language(s) loaded.
(./juliacon.cls (/app/.texlive/texmf-dist/tex/latex/psnfss/helvet.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/keyval.sty))
Document Class: juliacon 
(/app/.texlive/texmf-dist/tex/latex/base/latexsym.sty)
(/app/.texlive/texmf-dist/tex/latex/url/url.sty)
(/app/.texlive/texmf-dist/tex/latex/base/inputenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/utf8.def
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def)) (./journal_dat.tex)
(/app/.texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/app/.texlive/texmf-dist/tex/latex/tools/bm.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/app/.texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/app/.texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/app/.texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/app/.texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/app/.texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (./jlcode.sty

-- Package: `jlcode' 2.1 <2018/03/06> --
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(/app/.texlive/texmf-dist/tex/latex/base/textcomp.sty
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(/app/.texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
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(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def))
(/app/.texlive/texmf-dist/tex/latex/tools/calc.sty)
(/app/.texlive/texmf-dist/tex/latex/base/t1cmtt.fd))
(/app/.texlive/texmf-dist/tex/latex/preprint/authblk.sty)
(/app/.texlive/texmf-dist/tex/latex/caption/caption.sty
(/app/.texlive/texmf-dist/tex/latex/caption/caption3.sty)

Package caption Warning: Unsupported document class (or package) detected,
(caption)                usage of the caption package is not recommended.
See the caption package documentation for explanation.

)) (/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
(/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3-code.tex)
(/app/.texlive/texmf-dist/tex/latex/l3kernel/l3pdfmode.def)) (./shortex.sty
(./xifthen.sty (/app/.texlive/texmf-dist/tex/latex/base/ifthen.sty)
(./ifmtarg.sty)) (/app/.texlive/texmf-dist/tex/generic/xstring/xstring.sty
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(/app/.texlive/texmf-dist/tex/latex/tools/xspace.sty)
(/app/.texlive/texmf-dist/tex/latex/amsfonts/eucal.sty) (./dsfont.sty)
(./nicefrac.sty) (/app/.texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/app/.texlive/texmf-dist/tex/latex/amsmath/amstext.sty
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(./mathtools.sty (./mhsetup.sty)) (./cleveref.sty) (./crossreftools.sty)
(./import.sty) (./subfiles.sty)
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algpseudocode.sty
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algorithmicx.sty
Document Style algorithmicx 1.2 - a greatly improved `algorithmic' style
)
Document Style - pseudocode environments for use with the `algorithmicx' style
) (/app/.texlive/texmf-dist/tex/latex/algorithms/algorithm.sty
(/app/.texlive/texmf-dist/tex/latex/float/float.sty)) (./multirow.sty)
(./wrapfig.sty) (./microtype.sty
(/app/.texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(./microtype-pdftex.def)

Package microtype Warning: Could not find configuration file `microtype.cfg'!
(microtype)                This will almost certainly cause undesired results.
(microtype)                Please fix your installation.

) (/app/.texlive/texmf-dist/tex/latex/booktabs/booktabs.sty)

! LaTeX Error: File `xargs.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

Enter file name: 
! Emergency stop.
<read *> 

l.42 \DeclareOption
                   {colorhypersetup}{\hypersetup{colorlinks=true, allcolors=...
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on paper.log.
===========Latexmk: Missing input file: 'xargs.sty' from line
  '! LaTeX Error: File `xargs.sty' not found.'
Latexmk: Missing input file: 'xargs.sty' from line
  '! LaTeX Error: File `xargs.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex -halt-on-error  -recorder  "paper.tex" 1>&2'
------------
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./paper.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 22 language(s) loaded.
(./juliacon.cls (/app/.texlive/texmf-dist/tex/latex/psnfss/helvet.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/keyval.sty))
Document Class: juliacon 
(/app/.texlive/texmf-dist/tex/latex/base/latexsym.sty)
(/app/.texlive/texmf-dist/tex/latex/url/url.sty)
(/app/.texlive/texmf-dist/tex/latex/base/inputenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/utf8.def
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def)) (./journal_dat.tex)
(/app/.texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/app/.texlive/texmf-dist/tex/latex/tools/bm.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/app/.texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/app/.texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/app/.texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/app/.texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/app/.texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (./jlcode.sty

-- Package: `jlcode' 2.1 <2018/03/06> --
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(/app/.texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
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(/app/.texlive/texmf-dist/tex/latex/base/textcomp.sty
(/app/.texlive/texmf-dist/tex/latex/base/ts1enc.def
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(/app/.texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
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(/app/.texlive/texmf-dist/tex/latex/eurosym/eurosym.sty)
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def))
(/app/.texlive/texmf-dist/tex/latex/tools/calc.sty)
(/app/.texlive/texmf-dist/tex/latex/base/t1cmtt.fd))
(/app/.texlive/texmf-dist/tex/latex/preprint/authblk.sty)
(/app/.texlive/texmf-dist/tex/latex/caption/caption.sty
(/app/.texlive/texmf-dist/tex/latex/caption/caption3.sty)

Package caption Warning: Unsupported document class (or package) detected,
(caption)                usage of the caption package is not recommended.
See the caption package documentation for explanation.

)) (/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
(/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3-code.tex)
(/app/.texlive/texmf-dist/tex/latex/l3kernel/l3pdfmode.def)) (./shortex.sty
(./xifthen.sty (/app/.texlive/texmf-dist/tex/latex/base/ifthen.sty)
(./ifmtarg.sty)) (/app/.texlive/texmf-dist/tex/generic/xstring/xstring.sty
(/app/.texlive/texmf-dist/tex/generic/xstring/xstring.tex))
(/app/.texlive/texmf-dist/tex/latex/tools/xspace.sty)
(/app/.texlive/texmf-dist/tex/latex/amsfonts/eucal.sty) (./dsfont.sty)
(./nicefrac.sty) (/app/.texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/app/.texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (./bbm.sty)
(./mathtools.sty (./mhsetup.sty)) (./cleveref.sty) (./crossreftools.sty)
(./import.sty) (./subfiles.sty)
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algpseudocode.sty
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algorithmicx.sty
Document Style algorithmicx 1.2 - a greatly improved `algorithmic' style
)
Document Style - pseudocode environments for use with the `algorithmicx' style
) (/app/.texlive/texmf-dist/tex/latex/algorithms/algorithm.sty
(/app/.texlive/texmf-dist/tex/latex/float/float.sty)) (./multirow.sty)
(./wrapfig.sty) (./microtype.sty
(/app/.texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(./microtype-pdftex.def)

Package microtype Warning: Could not find configuration file `microtype.cfg'!
(microtype)                This will almost certainly cause undesired results.
(microtype)                Please fix your installation.

) (/app/.texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) (./xargs.sty
(/app/.texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/app/.texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/app/.texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex))))

! LaTeX Error: File `autonum.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

Enter file name: 
! Emergency stop.
<read *> 

l.54 \ifuseautonum \usepackage{autonum} \fi
                                           ^^M
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on paper.log.
===========Latexmk: Missing input file: 'autonum.sty' from line
  '! LaTeX Error: File `autonum.sty' not found.'
Latexmk: Missing input file: 'autonum.sty' from line
  '! LaTeX Error: File `autonum.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex -halt-on-error  -recorder  "paper.tex" 1>&2'
------------
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./paper.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 22 language(s) loaded.
(./juliacon.cls (/app/.texlive/texmf-dist/tex/latex/psnfss/helvet.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/keyval.sty))
Document Class: juliacon 
(/app/.texlive/texmf-dist/tex/latex/base/latexsym.sty)
(/app/.texlive/texmf-dist/tex/latex/url/url.sty)
(/app/.texlive/texmf-dist/tex/latex/base/inputenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/utf8.def
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/app/.texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def)) (./journal_dat.tex)
(/app/.texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/app/.texlive/texmf-dist/tex/latex/tools/bm.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/app/.texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/app/.texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/app/.texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/app/.texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/app/.texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/app/.texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/app/.texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/app/.texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg))
(/app/.texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/app/.texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (./jlcode.sty

-- Package: `jlcode' 2.1 <2018/03/06> --
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(/app/.texlive/texmf-dist/tex/latex/listings/listings.cfg))
(/app/.texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
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(/app/.texlive/texmf-dist/tex/latex/base/textcomp.sty
(/app/.texlive/texmf-dist/tex/latex/base/ts1enc.def
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(/app/.texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/app/.texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/app/.texlive/texmf-dist/tex/latex/eurosym/eurosym.sty)
(/app/.texlive/texmf-dist/tex/latex/base/fontenc.sty
(/app/.texlive/texmf-dist/tex/latex/base/t1enc.def))
(/app/.texlive/texmf-dist/tex/latex/tools/calc.sty)
(/app/.texlive/texmf-dist/tex/latex/base/t1cmtt.fd))
(/app/.texlive/texmf-dist/tex/latex/preprint/authblk.sty)
(/app/.texlive/texmf-dist/tex/latex/caption/caption.sty
(/app/.texlive/texmf-dist/tex/latex/caption/caption3.sty)

Package caption Warning: Unsupported document class (or package) detected,
(caption)                usage of the caption package is not recommended.
See the caption package documentation for explanation.

)) (/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
(/app/.texlive/texmf-dist/tex/latex/l3kernel/expl3-code.tex)
(/app/.texlive/texmf-dist/tex/latex/l3kernel/l3pdfmode.def)) (./shortex.sty
(./xifthen.sty (/app/.texlive/texmf-dist/tex/latex/base/ifthen.sty)
(./ifmtarg.sty)) (/app/.texlive/texmf-dist/tex/generic/xstring/xstring.sty
(/app/.texlive/texmf-dist/tex/generic/xstring/xstring.tex))
(/app/.texlive/texmf-dist/tex/latex/tools/xspace.sty)
(/app/.texlive/texmf-dist/tex/latex/amsfonts/eucal.sty) (./dsfont.sty)
(./nicefrac.sty) (/app/.texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/app/.texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/app/.texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (./bbm.sty)
(./mathtools.sty (./mhsetup.sty)) (./cleveref.sty) (./crossreftools.sty)
(./import.sty) (./subfiles.sty)
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algpseudocode.sty
(/app/.texlive/texmf-dist/tex/latex/algorithmicx/algorithmicx.sty
Document Style algorithmicx 1.2 - a greatly improved `algorithmic' style
)
Document Style - pseudocode environments for use with the `algorithmicx' style
) (/app/.texlive/texmf-dist/tex/latex/algorithms/algorithm.sty
(/app/.texlive/texmf-dist/tex/latex/float/float.sty)) (./multirow.sty)
(./wrapfig.sty) (./microtype.sty
(/app/.texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(./microtype-pdftex.def)

Package microtype Warning: Could not find configuration file `microtype.cfg'!
(microtype)                This will almost certainly cause undesired results.
(microtype)                Please fix your installation.

) (/app/.texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) (./xargs.sty
(/app/.texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/app/.texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/app/.texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex)))) (./autonum.sty

! LaTeX Error: File `etextools.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

Enter file name: 
! Emergency stop.
<read *> 

l.22 \let
         \forlistloop\autonum@etoolbox@forlistloop^^M
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on paper.log.
===========Latexmk: Missing input file: 'etextools.sty' from line
  '! LaTeX Error: File `etextools.sty' not found.'
Latexmk: Missing input file: 'etextools.sty' from line
  '! LaTeX Error: File `etextools.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex -halt-on-error  -recorder  "paper.tex" 1>&2'
------------
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./paper.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 22 language(s) loaded.
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! LaTeX Error: File `textpos.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

Enter file name: 
! Emergency stop.
<read *> 

l.25 \RequirePackage
                    {letltxmacro}^^M
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on paper.log.
===========Latexmk: Missing input file: 'textpos.sty' from line
  '! LaTeX Error: File `textpos.sty' not found.'
Latexmk: Missing input file: 'textpos.sty' from line
  '! LaTeX Error: File `textpos.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[miguelbiron]

@whedon generate pdf