Closed whedon closed 8 months ago
Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.
:warning: JOSS reduced service mode :warning:
Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.
For a list of things I can do to help you, just type:
@whedon commands
For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:
@whedon generate pdf
PDF failed to compile for issue #66 with the following error:
/app/vendor/ruby-2.4.4/lib/ruby/2.4.0/find.rb:43:in block in find': No such file or directory - 3ed1c49857552798aef2f6cb (Errno::ENOENT) from /app/vendor/ruby-2.4.4/lib/ruby/2.4.0/find.rb:43:in
collect!'
from /app/vendor/ruby-2.4.4/lib/ruby/2.4.0/find.rb:43:in find' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-d14a699185fb/lib/whedon/processor.rb:66:in
find_paper_paths'
from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-d14a699185fb/bin/whedon:53:in prepare' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/command.rb:27:in
run'
from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/invocation.rb:126:in invoke_command' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor.rb:387:in
dispatch'
from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/base.rb:466:in start' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-d14a699185fb/bin/whedon:131:in
<top (required)>'
from /app/vendor/bundle/ruby/2.4.0/bin/whedon:23:in load' from /app/vendor/bundle/ruby/2.4.0/bin/whedon:23:in
@whedon help generate
I'm sorry human, I don't understand that. You can see what commands I support by typing:
@whedon commands
@whedon commands
Here are some things you can ask me to do:
# List all of Whedon's capabilities
@whedon commands
# Assign a GitHub user as the sole reviewer of this submission
@whedon assign @username as reviewer
# Add a GitHub user to the reviewers of this submission
@whedon add @username as reviewer
# Re-invite a reviewer (if they can't update checklists)
@whedon re-invite @username as reviewer
# Remove a GitHub user from the reviewers of this submission
@whedon remove @username as reviewer
# List of editor GitHub usernames
@whedon list editors
# List of reviewers together with programming language preferences and domain expertise
@whedon list reviewers
# Change editorial assignment
@whedon assign @username as editor
# Set the software archive DOI at the top of the issue e.g.
@whedon set 10.0000/zenodo.00000 as archive
# Set the software version at the top of the issue e.g.
@whedon set v1.0.1 as version
# Open the review issue
@whedon start review
EDITORIAL TASKS
# All commands can be run on a non-default branch, to do this pass a custom
# branch name by following the command with `from branch custom-branch-name`.
# For example:
# Compile the paper
@whedon generate pdf
# Compile the paper from alternative branch
@whedon generate pdf from branch custom-branch-name
# Remind an author or reviewer to return to a review after a
# certain period of time (supported units days and weeks)
@whedon remind @reviewer in 2 weeks
# Ask Whedon to do a dry run of accepting the paper and depositing with Crossref
@whedon accept
# Ask Whedon to check the references for missing DOIs
@whedon check references
# Ask Whedon to check repository statistics for the submitted software
@whedon check repository
EiC TASKS
# Invite an editor to edit a submission (sending them an email)
@whedon invite @editor as editor
# Reject a paper
@whedon reject
# Withdraw a paper
@whedon withdraw
# Ask Whedon to actually accept the paper and deposit with Crossref
@whedon accept deposit=true
@arfon is there a way to indicate a sub-folder where the paper is located or must it always be "paper"?
@matbesancon - the issue here is that the submitted URL can't be cloned by Whedon.
You can't clone this URL:
https://github.com/NREL/SLiDE/tree/publications/publications/juliacon2020
...but you can clone this:
https://github.com/NREL/SLiDE
So the issue body at the top of this thread needs editing to have the address https://github.com/NREL/SLiDE
(which I'll do now).
On JOSS, we've recently started validating the URLs submitted can be cloned at submission time which stops this issue from coming up. I can try and apply that patch to your fork of the codebase too if you like?
@whedon generate pdf from branch publications
Attempting PDF compilation from custom branch publications. Reticulating splines etc...
PDF failed to compile for issue #66 with the following error:
===========Latexmk: Missing input file: 'siunitx.sty' from line
'! LaTeX Error: File siunitx.sty' not found.' Latexmk: Missing input file: 'siunitx.sty' from line '! LaTeX Error: File
siunitx.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
pdflatex: Command for 'pdflatex' gave return code 1
Refer to 'paper.log' for details
Looks like we failed to compile the PDF
☝️ looks like Whedon is at least trying to compile this now...
Thanks @arfon!
On JOSS, we've recently started validating the URLs submitted can be cloned at submission time which stops this issue from coming up. I can try and apply that patch to your fork of the codebase too if you like?
yes that would be great, I hadn't noticed the URL issue.
@clhughes it looks like a package is missing. You can download the .sty file and add it to the paper subfolder
@whedon assign @matbesancon as editor
OK, the editor is @matbesancon
@whedon generate pdf from branch publications
Attempting PDF compilation from custom branch publications. Reticulating splines etc...
PDF failed to compile for issue #66 with the following error:
===========Latexmk: Missing input file: 'siunitx.sty' from line
'! LaTeX Error: File siunitx.sty' not found.' Latexmk: Missing input file: 'siunitx.sty' from line '! LaTeX Error: File
siunitx.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
pdflatex: Command for 'pdflatex' gave return code 1
Refer to 'paper.log' for details
Looks like we failed to compile the PDF
Hi @clhughes, I'm taking over the edition for this proceeding, sorry about the delays we experienced. Looking at the repo: https://github.com/NREL/SLiDE/tree/publications/publications/juliacon2020
Could you change the folder of the paper from /publications/juliacon2020
to /paper
?
ping @clhughes
bump
Dear author @clhughes, @arfon, we are in the process of resuming the stalled JuliaCon reviews. If you are still interested in getting your work published, please start addressing the author-action-required items within the coming 3 weeks. If no action is taken within the coming 3 weeks, we will close the submission. Thank you for your understanding.
@editorialbot reject
Paper rejected.
Submitting author: @clhughes (Caroline Hughes) Repository: https://github.com/NREL/SLiDE Version: Editor: @matbesancon Reviewer: Pending Managing EiC: Valentin Churavy
Author instructions
Thanks for submitting your paper to JCON @clhughes. Currently, there isn't an JCON editor assigned to your paper.
The author's suggestion for the handling editor is @matbesancon.
@clhughes if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JCON and may be suitable for this submission (please start at the bottom of the list).
Editor instructions
The JCON submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type: