search

JuliaCon / proceedings-review

6 stars 1 forks source link

[PRE REVIEW]: CompositionalNetworks.jl: a scaling glass-box neural network to learn combinatorial functions #87

Closed whedon closed 8 months ago

whedon commented 2 years ago

Submitting author: @azzaare (Jean-François Baffier) Repository: https://github.com/JuliaConstraints/CompositionalNetworks.jl Version: Editor: @matbesancon Reviewer: Pending Managing EiC: Valentin Churavy

Author instructions

Thanks for submitting your paper to JCON @azzaare. Currently, there isn't an JCON editor assigned to your paper.

The author's suggestion for the handling editor is @matbesancon.

@azzaare if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JCON and may be suitable for this submission (please start at the bottom of the list).

Editor instructions

The JCON submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type:

@whedon commands
whedon commented 2 years ago

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

:warning: JOSS reduced service mode :warning:

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@whedon generate pdf
whedon commented 2 years ago

PDF failed to compile for issue #87 with the following error: 

 Can't find any papers to compile :-(
whedon commented 2 years ago 
Software report (experimental):

github.com/AlDanial/cloc v 1.88  T=0.02 s (1481.2 files/s, 82011.8 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Julia                           15            165             45           1036
Markdown                        10             81              0            197
YAML                             3              0              0            105
TOML                             2              4              0             28
-------------------------------------------------------------------------------
SUM:                            30            250             45           1366
-------------------------------------------------------------------------------

Statistical information for the repository '790bd4ab64c105e4375ad534' was
gathered on 2021/09/30.
No commited files with the specified extensions were found.
Azzaare commented 2 years ago

@whedon commands

whedon commented 2 years ago

Here are some things you can ask me to do:

# List Whedon's capabilities
@whedon commands

# List of editor GitHub usernames
@whedon list editors

# List of reviewers together with programming language preferences and domain expertise
@whedon list reviewers

EDITORIAL TASKS

# Compile the paper
@whedon generate pdf

# Compile the paper from alternative branch
@whedon generate pdf from branch custom-branch-name

# Ask Whedon to check the references for missing DOIs
@whedon check references

# Ask Whedon to check repository statistics for the submitted software
@whedon check repository
Azzaare commented 2 years ago

@whedon generate pdf from branch main

whedon commented 2 years ago 
Attempting PDF compilation from custom branch main. Reticulating splines etc...
whedon commented 2 years ago

PDF failed to compile for issue #87 with the following error: 

 Can't find any papers to compile :-(
Azzaare commented 2 years ago

@whedon generate pdf

whedon commented 2 years ago

PDF failed to compile for issue #87 with the following error: 

 /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/lib/whedon/author.rb:72:in `block in build_affiliation_string': Problem with affiliations for Florian \textsc{Richoux}, perhaps the affiliations index need quoting? (RuntimeError)
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/lib/whedon/author.rb:71:in `each'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/lib/whedon/author.rb:71:in `build_affiliation_string'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/lib/whedon/author.rb:17:in `initialize'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/lib/whedon.rb:205:in `new'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/lib/whedon.rb:205:in `block in parse_authors'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/lib/whedon.rb:202:in `each'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/lib/whedon.rb:202:in `parse_authors'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/lib/whedon.rb:93:in `initialize'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/lib/whedon/processor.rb:38:in `new'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/lib/whedon/processor.rb:38:in `set_paper'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/bin/whedon:58:in `prepare'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/command.rb:27:in `run'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/invocation.rb:126:in `invoke_command'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor.rb:387:in `dispatch'
    from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/base.rb:466:in `start'
    from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-c5c16aedb3d6/bin/whedon:131:in `<top (required)>'
    from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `load'
    from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `<main>'
Azzaare commented 2 years ago

@whedon generate pdf

whedon commented 2 years ago

PDF failed to compile for issue #87 with the following error: 

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'placeins.sty' from line
  '! LaTeX Error: File `placeins.sty' not found.'
Latexmk: Missing input file: 'placeins.sty' from line
  '! LaTeX Error: File `placeins.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF
Azzaare commented 2 years ago

@whedon generate pdf

whedon commented 2 years ago

PDF failed to compile for issue #87 with the following error: 

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Rule 'pdflatex': File changes, etc:
   Changed files, or newly in use since previous run(s):
      'paper.aux'
------------
Run number 2 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Rule 'pdflatex': File changes, etc:
   Changed files, or newly in use since previous run(s):
      'paper.out'
------------
Run number 3 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF
Azzaare commented 2 years ago

@matbesancon I have tried to solve the building error, but I can't reproduce it on my local machine (in the sense that it build perfectly with latexmk -bibtex -pdf paper.tex. And I don't have the access to the log. Any idea of what I should do now?

matbesancon commented 2 years ago

hi, it looks like you might be missing the .latexmkrc file at least from the submission template, can you check if you might be missing others? https://github.com/JuliaCon/JuliaConSubmission.jl/blob/master/paper/.latexmkrc

vchuravy commented 2 years ago

@whedon assign @matbesancon as editor

whedon commented 2 years ago

OK, the editor is @matbesancon

Azzaare commented 2 years ago

@whedon generate pdf

whedon commented 2 years ago

PDF failed to compile for issue #87 with the following error: 

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'placeins.sty' from line
  '! LaTeX Error: File `placeins.sty' not found.'
Latexmk: Missing input file: 'placeins.sty' from line
  '! LaTeX Error: File `placeins.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF
Azzaare commented 2 years ago

@whedon generate pdf

whedon commented 2 years ago

PDF failed to compile for issue #87 with the following error: 

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF
Azzaare commented 2 years ago

@whedon generate pdf

whedon commented 2 years ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

Azzaare commented 2 years ago

@matbesancon thanks. It was part of the problem. I also had one incompatible package with the class, but it was not critical, so it is fixed now.

matbesancon commented 2 years ago

@Azzaare let us know when your updates are done

Azzaare commented 2 years ago

Hi @matbesancon Thank you for the reminder, I had some unexpected things to handle and forgot to check github.

luraess commented 9 months ago

Dear author @Azzaare , we are in the process of resuming the stalled JuliaCon reviews. If you are still interested in getting your work published, please start addressing the author-action-required items within the coming 3 weeks. If no action is taken within the coming 3 weeks, we will close the submission. Thank you for your understanding. The new editorial team

Azzaare commented 8 months ago

@luraess Sorry for the late reply. Due to some unforeseen circumstances of one of the quthor, a paper linked to this one has been delayed for years. I am working (slowly) at doing the related part so that I could update this one.

It won't be ready for months though so, it is better to properly close this issue.

Thank you for the time you took, and we will incorporate all review comments once we are able to submit here again (probably through a talk at the next JuliaCon as we are extending our work on the topic).

luraess commented 8 months ago

@Azzaare thanks for reaching out and glad to read you are planning on submitting an update to the Proceedings when ready in a later stage. Do not hesitate to reach out at that moment and thanks for considering the JuliaCon Proceeding to publish your latest advances! Best, Ludovic

lucaferranti commented 2 months ago

@editorialbot reject

editorialbot commented 2 months ago

Paper rejected.