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JuliaDataCubes / YAXArrays.jl

Yet Another XArray-like Julia package
https://juliadatacubes.github.io/YAXArrays.jl/
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ERROR: KeyError: key :Ti not found #320

Closed dpabon closed 1 year ago

dpabon commented 1 year ago

Doing a rechunking of a Dataset that contains Ti

using Pkg
cd("/Net/Groups/BGI/work_3/OEMC/oemc_towers/")
Pkg.activate("/Net/Groups/BGI/work_3/OEMC/oemc_towers/")

using YAXArrays, CairoMakie, YAXArraysToolbox, Zarr, Statistics,  DiskArrays, DiskArrayTools, Revise, DataFrames, CSV, Plots, ProgressMeter, DimensionalData

YAXArrays.YAXdir("/Net/Groups/BGI/scratch/dpabon/YAXA_tmp")

cubeloc = "/Net/Groups/BGI/scratch/zmhamdi/sen2cube/"

sen2cube = open_dataset(cubeloc)

site_name = "ES-LMa"

site_cube = sen2cube[site = At(site_name)]

site_cube.Ti
site_cube_space = setchunks(site_cube, Dict(:lon_pixel => 1000, :lat_pixel => 1000, :Ti => 1))

savedataset(site_cube_space; path = "/Net/Groups/BGI/scratch/dpabon/ES-LMa_space.zarr", overwrite = true)

Produce

ERROR: KeyError: key :Ti not found
Stacktrace:

getindex(h::Dict{Symbol, Int64}, key::Symbol) at [./dict.jl](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)

#93 at [./none](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)

iterate at [./generator.jl](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)

collect_to!(dest::Vector{Int64}, itr::Base.Generator{Base.KeySet{Symbol, Dict{Symbol, DimensionalData.Dimensions.Dimension}}, YAXArrays.Datasets.var"#93#99"{Dict{Symbol, Int64}}}, offs::Int64, st::Int64) at [./array.jl](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)

collect_to_with_first! at [./array.jl](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)

collect(itr::Base.Generator{Base.KeySet{Symbol, Dict{Symbol, DimensionalData.Dimensions.Dimension}}, YAXArrays.Datasets.var"#93#99"{Dict{Symbol, Int64}}}) at [./array.jl](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)

savedataset(ds::Dataset; path::String, persist::Nothing, overwrite::Bool, append::Bool, skeleton::Bool, backend::Symbol, driver::Symbol, max_cache::Float64, writefac::Float64, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) at [/Net/Groups/BGI/people/dpabon/bin/julia_packages/packages/YAXArrays/lvvMa/src/DatasetAPI/Datasets.jl](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)

kwcall(::NamedTuple{(:path, :overwrite), Tuple{String, Bool}}, ::typeof(savedataset), ds::Dataset) at [/Net/Groups/BGI/people/dpabon/bin/julia_packages/packages/YAXArrays/lvvMa/src/DatasetAPI/Datasets.jl](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)

top-level scope at [/Net/Groups/BGI/work_3/OEMC/oemc_towers/bin/ES-LMa_developing_all_bands.jl](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)

ERROR: KeyError: key :Ti not found
Stacktrace:

getindex(h::Dict{Symbol, Int64}, key::Symbol) at [./dict.jl](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)

#93 at [./none](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)

iterate at [./generator.jl](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)

collect_to!(dest::Vector{Int64}, itr::Base.Generator{Base.KeySet{Symbol, Dict{Symbol, DimensionalData.Dimensions.Dimension}}, YAXArrays.Datasets.var"#93#99"{Dict{Symbol, Int64}}}, offs::Int64, st::Int64) at [./array.jl](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)

collect_to_with_first! at [./array.jl](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)

collect(itr::Base.Generator{Base.KeySet{Symbol, Dict{Symbol, DimensionalData.Dimensions.Dimension}}, YAXArrays.Datasets.var"#93#99"{Dict{Symbol, Int64}}}) at [./array.jl](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)

savedataset(ds::Dataset; path::String, persist::Nothing, overwrite::Bool, append::Bool, skeleton::Bool, backend::Symbol, driver::Symbol, max_cache::Float64, writefac::Float64, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) at [/Net/Groups/BGI/people/dpabon/bin/julia_packages/packages/YAXArrays/lvvMa/src/DatasetAPI/Datasets.jl](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)

kwcall(::NamedTuple{(:path, :overwrite), Tuple{String, Bool}}, ::typeof(savedataset), ds::Dataset) at [/Net/Groups/BGI/people/dpabon/bin/julia_packages/packages/YAXArrays/lvvMa/src/DatasetAPI/Datasets.jl](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)

top-level scope at [/Net/Groups/BGI/work_3/OEMC/oemc_towers/bin/ES-LMa_developing_all_bands.jl](vscode-file://vscode-app/usr/share/code/resources/app/out/vs/code/electron-sandbox/workbench/workbench.html)
kongdd commented 1 year ago

can close now. solved by #337