Error on clean install on apple silicon mac

[god-shatter]

I seem to be getting a bunch of warnings and then an error on a clean install? Can I get around this somehow?

WARNING: Method definition kwcall(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:sqrt3}) in module IrrationalConstants at irrationals.jl:215 overwritten in module StatsFuns on the same line (check for duplicate calls to `include`).
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition kwcall(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:quartπ}) in module IrrationalConstants at irrationals.jl:215 overwritten in module StatsFuns on the same line (check for duplicate calls to `include`).
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition kwcall(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:invsqrt2}) in module IrrationalConstants at irrationals.jl:215 overwritten in module StatsFuns on the same line (check for duplicate calls to `include`).
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition kwcall(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:logtwo}) in module IrrationalConstants at irrationals.jl:208 overwritten in module StatsFuns at irrationals.jl:215.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition kwcall(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:sqrthalfπ}) in module IrrationalConstants at irrationals.jl:215 overwritten in module StatsFuns on the same line (check for duplicate calls to `include`).
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition kwcall(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:invπ}) in module IrrationalConstants at irrationals.jl:215 overwritten in module StatsFuns on the same line (check for duplicate calls to `include`).
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition kwcall(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:halfπ}) in module IrrationalConstants at irrationals.jl:215 overwritten in module StatsFuns on the same line (check for duplicate calls to `include`).
  ** incremental compilation may be fatally broken for this module **

ERROR: LoadError: ArgumentError: Package AdaptStaticArraysCoreExt does not have Adapt in its dependencies:
- You may have a partially installed environment. Try `Pkg.instantiate()`
  to ensure all packages in the environment are installed.
- Or, if you have AdaptStaticArraysCoreExt checked out for development and have
  added Adapt as a dependency but haven't updated your primary
  environment's manifest file, try `Pkg.resolve()`.
- Otherwise you may need to report an issue with AdaptStaticArraysCoreExt
Stacktrace:
 [1] macro expansion
   @ ./loading.jl:1634 [inlined]
 [2] macro expansion
   @ ./lock.jl:267 [inlined]
 [3] require(into::Module, mod::Symbol)
   @ Base ./loading.jl:1611
 [4] include
   @ ./Base.jl:457 [inlined]
 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
   @ Base ./loading.jl:2049
 [6] top-level scope
   @ stdin:3
in expression starting at /Users/sugar/.julia/packages/Adapt/Ur60R/ext/AdaptStaticArraysExt.jl:1
in expression starting at stdin:3
┌ Error: Error during loading of extension AdaptStaticArraysExt of Adapt, use `Base.retry_load_extensions()` to retry.
│   exception =
│    1-element ExceptionStack:
│    Failed to precompile AdaptStaticArraysExt [e1699a77-9e31-5da8-bb3e-0a796f95f0a0] to "/Users/sugar/.julia/compiled/v1.9/AdaptStaticArraysExt/jl_rBLO9a".
│    Stacktrace:
│      [1] error(s::String)
│        @ Base ./error.jl:35
│      [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
│        @ Base ./loading.jl:2300
│      [3] compilecache
│        @ ./loading.jl:2167 [inlined]
│      [4] _require(pkg::Base.PkgId, env::Nothing)
│        @ Base ./loading.jl:1805
│      [5] _require_prelocked(uuidkey::Base.PkgId, env::Nothing)
│        @ Base ./loading.jl:1660
│      [6] _require_prelocked(uuidkey::Base.PkgId)
│        @ Base ./loading.jl:1658
│      [7] run_extension_callbacks(extid::Base.ExtensionId)
│        @ Base ./loading.jl:1255
│      [8] run_extension_callbacks(pkgid::Base.PkgId)
│        @ Base ./loading.jl:1290
│      [9] run_package_callbacks(modkey::Base.PkgId)
│        @ Base ./loading.jl:1124
│     [10] _tryrequire_from_serialized(modkey::Base.PkgId, path::String, ocachepath::String, sourcepath::String, depmods::Vector{Any})
│        @ Base ./loading.jl:1398
│     [11] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128)
│        @ Base ./loading.jl:1494
│     [12] _require(pkg::Base.PkgId, env::String)
│        @ Base ./loading.jl:1783
│     [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
│        @ Base ./loading.jl:1660
│     [14] macro expansion
│        @ ./loading.jl:1648 [inlined]
│     [15] macro expansion
│        @ ./lock.jl:267 [inlined]
│     [16] require(into::Module, mod::Symbol)
│        @ Base ./loading.jl:1611
│     [17] include
│        @ ./Base.jl:457 [inlined]
│     [18] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
│        @ Base ./loading.jl:2049
│     [19] top-level scope
│        @ stdin:3
│     [20] eval
│        @ ./boot.jl:370 [inlined]
│     [21] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│        @ Base ./loading.jl:1903
│     [22] include_string
│        @ ./loading.jl:1913 [inlined]
│     [23] exec_options(opts::Base.JLOptions)
│        @ Base ./client.jl:305
│     [24] _start()
│        @ Base ./client.jl:522
└ @ Base loading.jl:1261
ERROR: LoadError: UndefVarError: `DiffEqBase` not defined
Stacktrace:
 [1] include
   @ ./Base.jl:457 [inlined]
 [2] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
   @ Base ./loading.jl:2049
 [3] top-level scope
   @ stdin:3
in expression starting at /Users/sugar/.julia/packages/ChaosTools/b8DPA/src/ChaosTools.jl:1
in expression starting at stdin:3
ERROR: LoadError: Failed to precompile ChaosTools [608a59af-f2a3-5ad4-90b4-758bdf3122a7] to "/Users/sugar/.julia/compiled/v1.9/ChaosTools/jl_p7qWjm".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
    @ Base ./loading.jl:2300
  [3] compilecache
    @ ./loading.jl:2167 [inlined]
  [4] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1805
  [5] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1660
  [6] macro expansion
    @ ./loading.jl:1648 [inlined]
  [7] macro expansion
    @ ./lock.jl:267 [inlined]
  [8] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1611
  [9] include
    @ ./Base.jl:457 [inlined]
 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2049
 [11] top-level scope
    @ stdin:3
in expression starting at /Users/sugar/.julia/packages/DynamicalSystems/quIMb/src/DynamicalSystems.jl:1
in expression starting at stdin:3
ERROR: Failed to precompile DynamicalSystems [61744808-ddfa-5f27-97ff-6e42cc95d634] to "/Users/sugar/.julia/compiled/v1.9/DynamicalSystems/jl_FVffya".
Stacktrace:
 [1] error(s::String)
   @ Base ./error.jl:35
 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
   @ Base ./loading.jl:2300
 [3] compilecache
   @ ./loading.jl:2167 [inlined]
 [4] _require(pkg::Base.PkgId, env::String)
   @ Base ./loading.jl:1805
 [5] _require_prelocked(uuidkey::Base.PkgId, env::String)
   @ Base ./loading.jl:1660
 [6] macro expansion
   @ ./loading.jl:1648 [inlined]
 [7] macro expansion
   @ ./lock.jl:267 [inlined]
 [8] require(into::Module, mod::Symbol)
   @ Base ./loading.jl:1611

[Datseris]

Hi there,

I dont think this is a clean install. A clean install means a completely empty environment. To do a clean install do

] # enter package mode
activate @DynSys # named environment
add DynamicalSystems

Additionally, the errors you get come from the packages: AdaptStaticArraysCoreExt and/or StatsFuns. (this is clear from the error message)

Neither of those are directly used by DynamicalSystems.jl. If you do a clean install and the error indeed mentions DynamicalSystems in any way, feel free to re-open this, otherwise please open this issue at the packages that the error message mentions.

[god-shatter]

Oh I see, looks like I had to nuke ~/.julia. Thanks for the hint.