JuliaEarth / GeoStats.jl

An extensible framework for geospatial data science and geostatistical modeling fully written in Julia
https://juliaearth.github.io/GeoStatsDocs/stable/
MIT License
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Failed to precompile ERROR: LoadError: UndefVarError: `ColSpec` not defined #358

Closed crobro254 closed 11 months ago

crobro254 commented 11 months ago

I'm new to Julia, maybe it's wrong with my environment, but using hints from REPL or Pkg I can't find a solution, nor did info on this error found by google search or issue search myself, so I raised this issue.

julia> using GeoStats [ Info: Precompiling GeoStats [dcc97b0b-8ce5-5539-9008-bb190f959ef6] WARNING: could not import TableTransforms.ColSpec into GeoStatsTransforms WARNING: could not import TableTransforms.Col into GeoStatsTransforms WARNING: could not import TableTransforms.AllSpec into GeoStatsTransforms WARNING: could not import TableTransforms.NoneSpec into GeoStatsTransforms WARNING: could not import TableTransforms.colspec into GeoStatsTransforms WARNING: could not import TableTransforms.choose into GeoStatsTransforms ERROR: LoadError: UndefVarError: ColSpec not defined Stacktrace: [1] top-level scope @ C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\uniquecoords.jl:5 [2] include(mod::Module, _path::String) @ Base .\Base.jl:457 [3] include(x::String) @ GeoStatsTransforms C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:5 [4] top-level scope @ C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:29 [5] include @ .\Base.jl:457 [inlined] [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base .\loading.jl:2010 [7] top-level scope @ stdin:2 in expression starting at C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\uniquecoords.jl:5 in expression starting at C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:5 in expression starting at stdin:2 ERROR: LoadError: Failed to precompile GeoStatsTransforms [725d9659-360f-4996-9c94-5f19c7e4a8a6] to "C:\Users\PV\.julia\compiled\v1.9\GeoStatsTransforms\jl_19D2.tmp". Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:2260 [3] compilecache @ .\loading.jl:2127 [inlined] [4] _require(pkg::Base.PkgId, env::String) @ Base .\loading.jl:1770 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base .\loading.jl:1625 [6] macro expansion @ .\loading.jl:1613 [inlined] [7] macro expansion @ .\lock.jl:267 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1576 [9] include @ .\Base.jl:457 [inlined] [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base .\loading.jl:2010 [11] top-level scope @ stdin:2 in expression starting at C:\Users\PV.julia\packages\GeoStats\BQ7dR\src\GeoStats.jl:5 in expression starting at stdin:2 ERROR: Failed to precompile GeoStats [dcc97b0b-8ce5-5539-9008-bb190f959ef6] to "C:\Users\PV\.julia\compiled\v1.9\GeoStats\jl_FE9D.tmp". Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:2260 [3] compilecache @ .\loading.jl:2127 [inlined] [4] _require(pkg::Base.PkgId, env::String) @ Base .\loading.jl:1770 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base .\loading.jl:1625 [6] macro expansion @ .\loading.jl:1613 [inlined] [7] macro expansion @ .\lock.jl:267 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1576

My packages versions are: (@v1.9) pkg> status -m Status C:\Users\PV.julia\environments\v1.9\Manifest.toml [47edcb42] ADTypes v0.2.5 ⌅ [c3fe647b] AbstractAlgebra v0.33.0 [621f4979] AbstractFFTs v1.5.0 ⌅ [80f14c24] AbstractMCMC v4.4.2 ⌅ [7a57a42e] AbstractPPL v0.6.2 [1520ce14] AbstractTrees v0.4.4 [79e6a3ab] Adapt v3.7.2 ⌅ [0bf59076] AdvancedHMC v0.5.5 ⌅ [5b7e9947] AdvancedMH v0.7.4 ⌅ [576499cb] AdvancedPS v0.4.3 [b5ca4192] AdvancedVI v0.2.4 [dce04be8] ArgCheck v2.3.0 ⌅ [ec485272] ArnoldiMethod v0.1.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.6.1 [30b0a656] ArrayInterfaceCore v0.1.29 ⌃ [4c555306] ArrayLayouts v0.8.18 [a9b6321e] Atomix v0.1.0 [13072b0f] AxisAlgorithms v1.0.1 [39de3d68] AxisArrays v0.4.7 ⌅ [aae01518] BandedMatrices v0.17.18 [198e06fe] BangBang v0.3.39 [9718e550] Baselet v0.1.1 [6e4b80f9] BenchmarkTools v1.4.0 [0e736298] Bessels v0.2.8 [e2ed5e7c] Bijections v0.1.6 [76274a88] Bijectors v0.13.8 [d1d4a3ce] BitFlags v0.1.8 [62783981] BitTwiddlingConvenienceFunctions v0.1.5 ⌅ [764a87c0] BoundaryValueDiffEq v2.11.0 ⌅ [fa961155] CEnum v0.4.2 [2a0fbf3d] CPUSummary v0.2.4 [336ed68f] CSV v0.10.11 [49dc2e85] Calculus v0.5.1 [aafaddc9] CatIndices v0.2.2 [324d7699] CategoricalArrays v0.10.8 [8be319e6] Chain v0.5.0 [082447d4] ChainRules v1.58.0 [d360d2e6] ChainRulesCore v1.18.0 [9e997f8a] ChangesOfVariables v0.1.8 [7a955b69] CircularArrays v1.3.3 [fb6a15b2] CloseOpenIntervals v0.1.12 [aaaa29a8] Clustering v0.15.5 [944b1d66] CodecZlib v0.7.3 [35d6a980] ColorSchemes v3.24.0 [3da002f7] ColorTypes v0.11.4 ⌅ [c3611d14] ColorVectorSpace v0.9.10 [5ae59095] Colors v0.12.10 [9cc86067] ColumnSelectors v0.1.1 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.0 [34da2185] Compat v4.10.1 [b152e2b5] CompositeTypes v0.1.3 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.3.0 [8f4d0f93] Conda v1.10.0 [992eb4ea] CondaPkg v0.2.22 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.5.4 [6add18c4] ContextVariablesX v0.1.3 [d38c429a] Contour v0.6.2 [150eb455] CoordinateTransformations v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [dc8bdbbb] CustomUnitRanges v1.0.2 [717857b8] DSP v0.7.9 [9a962f9c] DataAPI v1.15.0 [a93c6f00] DataFrames v1.6.1 ⌅ [6cb2f572] DataScienceTraits v0.1.0 [864edb3b] DataStructures v0.18.15 [e2d170a0] DataValueInterfaces v1.0.0 [7806a523] DecisionTree v0.12.4 [244e2a9f] DefineSingletons v0.1.2 [bcd4f6db] DelayDiffEq v5.43.2 [8bb1440f] DelimitedFiles v1.9.1 [b429d917] DensityInterface v0.4.0 [ab46fb84] DensityRatioEstimation v1.2.1 [85a47980] Dictionaries v0.3.25 ⌃ [2b5f629d] DiffEqBase v6.130.0 [459566f4] DiffEqCallbacks v2.34.0 [77a26b50] DiffEqNoiseProcess v5.19.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [e0ca9c66] DifferenceEquations v0.5.3 [beacd9db] DifferentiableStateSpaceModels v0.5.3 ⌃ [0c46a032] DifferentialEquations v7.7.0 [b4f34e82] Distances v0.10.11 [31c24e10] Distributions v0.25.104 ⌃ [ced4e74d] DistributionsAD v0.6.50 [ffbed154] DocStringExtensions v0.9.3 ⌅ [5b8099bc] DomainSets v0.6.7 [fa6b7ba4] DualNumbers v0.6.8 ⌅ [366bfd00] DynamicPPL v0.23.21 [7c1d4256] DynamicPolynomials v0.5.3 ⌅ [cad2338a] EllipticalSliceSampling v1.1.0 [4e289a0a] EnumX v1.0.4 [7da242da] Enzyme v0.11.11 [f151be2c] EnzymeCore v0.6.4 [460bff9d] ExceptionUnwrapping v0.1.9 [d4d017d3] ExponentialUtilities v1.25.0 [e2ba6199] ExprTools v0.1.10 [c87230d0] FFMPEG v0.4.1 [4f61f5a4] FFTViews v0.3.2 [7a1cc6ca] FFTW v1.7.2 [cc61a311] FLoops v0.2.1 [b9860ae5] FLoopsBase v0.1.1 [7034ab61] FastBroadcast v0.2.8 [9aa1b823] FastClosures v0.3.2 ⌅ [29a986be] FastLapackInterface v0.1.3 [5789e2e9] FileIO v1.16.1 [48062228] FilePathsBase v0.9.21 ⌅ [1a297f60] FillArrays v0.13.11 [6a86dc24] FiniteDiff v2.21.1 [53c48c17] FixedPointNumbers v0.8.4 [587475ba] Flux v0.14.7 [59287772] Formatting v0.4.2 [f6369f11] ForwardDiff v0.10.36 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.4.5 [38e38edf] GLM v1.9.0 ⌃ [0c68f7d7] GPUArrays v8.8.1 [46192b85] GPUArraysCore v0.1.5 [61eb1bfa] GPUCompiler v0.25.0 ⌃ [28b8d3ca] GR v0.72.8 ⌅ [3b00829b] GeneralizedSylvesterSolver v0.1.2 [c145ed77] GenericSchur v0.5.3 ⌃ [dcc97b0b] GeoStats v0.45.5 ⌅ [323cb8eb] GeoStatsBase v0.38.0 ⌅ [ad987403] GeoStatsModels v0.1.2 ⌃ [50e95529] GeoStatsSolvers v0.7.4 ⌅ [725d9659] GeoStatsTransforms v0.1.0 ⌃ [e502b557] GeoTables v1.9.1 [a2bd30eb] Graphics v1.1.2 [86223c79] Graphs v1.9.0 [42e2da0e] Grisu v1.0.2 [0b43b601] Groebner v0.5.0 [d5909c97] GroupsCore v0.4.2 [19dc6840] HCubature v1.5.1 [cd3eb016] HTTP v1.10.1 [2c695a8d] HistogramThresholding v0.3.1 [3e5b6fbb] HostCPUFeatures v0.1.16 [34004b35] HypergeometricFunctions v0.3.23 [09f84164] HypothesisTests v0.11.0 [7073ff75] IJulia v1.24.2 [7869d1d1] IRTools v0.4.11 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.11 ⌃ [c817782e] ImageBase v0.1.5 [cbc4b850] ImageBinarization v0.3.0 [f332f351] ImageContrastAdjustment v0.3.12 ⌅ [a09fc81d] ImageCore v0.9.4 [89d5987c] ImageCorners v0.1.3 [51556ac3] ImageDistances v0.2.17 ⌃ [6a3955dd] ImageFiltering v0.7.6 ⌃ [82e4d734] ImageIO v0.4.1 [6218d12a] ImageMagick v1.3.0 [bc367c6b] ImageMetadata v0.9.9 [787d08f9] ImageMorphology v0.4.5 [2996bd0c] ImageQualityIndexes v0.3.7 ⌃ [80713f31] ImageSegmentation v1.8.1 [4e3cecfd] ImageShow v0.3.8 [02fcd773] ImageTransformations v0.10.0 [916415d5] Images v0.26.0 [313cdc1a] Indexing v1.1.1 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.4 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.0 [505f98c9] InplaceOps v0.3.0 [18e54dd8] IntegerMathUtils v0.1.2 [1d092043] IntegralArrays v0.1.5 ⌅ [a98d9a8b] Interpolations v0.14.7 [8197267c] IntervalSets v0.7.8 [3587e190] InverseFunctions v0.1.12 [41ab1584] InvertedIndices v1.3.0 [92d709cd] IrrationalConstants v0.2.2 [c8e1da08] IterTools v1.8.0 [42fd0dbc] IterativeSolvers v0.9.3 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.4.38 [1019f520] JLFzf v0.1.7 [692b3bcd] JLLWrappers v1.5.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.13.2 [b14d175d] JuliaVariables v0.2.4 [652e05fd] JuliaZH v1.6.0 [ccbc3e58] JumpProcesses v9.9.0 ⌅ [ef3ab10e] KLU v0.3.0 [63c18a36] KernelAbstractions v0.9.14 [5ab0869b] KernelDensity v0.6.7 ⌅ [7e59e93b] KroneckerTools v0.1.1 ⌅ [ba0b0d4f] Krylov v0.8.4 ⌅ [0b1a1467] KrylovKit v0.5.4 [2d691ee1] LIBLINEAR v0.6.0 [b1bec4e5] LIBSVM v0.8.0 [929cbde3] LLVM v6.4.1 [8ac3fa9e] LRUCache v1.6.0 [b964fa9f] LaTeXStrings v1.3.1 [2ee39098] LabelledArrays v1.14.0 [984bce1d] LambertW v0.4.6 [b4fcebef] Lasso v0.7.1 ⌅ [23fbe1c1] Latexify v0.15.21 [10f19ff3] LayoutPointers v0.1.15 [50d2b5c4] Lazy v0.15.1 [8cdb02fc] LazyModules v0.3.1 [1d6d02ad] LeftChildRightSiblingTrees v0.2.0 [2d8b4e74] LevyArea v1.0.0 [6f1fad26] Libtask v0.8.6 [093fc24a] LightGraphs v1.3.5 [d3d80556] LineSearches v7.2.0 [7a12625a] LinearMaps v3.11.1 ⌅ [7ed4a6bd] LinearSolve v1.20.0 [6fdf6af0] LogDensityProblems v2.1.1 [996a588d] LogDensityProblemsAD v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.26 [e6f89c97] LoggingExtras v1.0.3 [bdcacae8] LoopVectorization v0.12.166 [30fc2ffe] LossFunctions v0.11.1 [c7f686f2] MCMCChains v6.0.4 [be115224] MCMCDiagnosticTools v0.3.8 [f0e99cf1] MLBase v0.9.2 [e80e1ace] MLJModelInterface v1.9.3 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.3 [1914dd2f] MacroTools v0.5.11 [d125e4d3] ManualMemory v0.1.8 [dbb5928d] MappedArrays v0.4.2 [99c1a7ee] MatrixEquations v2.3.2 [739be429] MbedTLS v1.1.9 [eff96d63] Measurements v2.11.0 [442fdcdd] Measures v0.3.2 ⌅ [eacbb407] Meshes v0.35.21 [626554b9] MetaGraphs v0.7.2 [128add7d] MicroCollections v0.1.4 [0b3b1443] MicroMamba v0.1.14 [e1d29d7a] Missings v1.1.0 [78c3b35d] Mocking v0.7.7 [e94cdb99] MosaicViews v0.3.4 [46d2c3a1] MuladdMacro v0.2.4 [102ac46a] MultivariatePolynomials v0.5.3 [6f286f6a] MultivariateStats v0.10.2 [d8a4904e] MutableArithmetics v1.4.0 [d41bc354] NLSolversBase v7.8.3 [2774e3e8] NLsolve v4.5.1 [872c559c] NNlib v0.9.8 [77ba4419] NaNMath v1.0.2 [71a1bf82] NameResolution v0.1.5 [86f7a689] NamedArrays v0.10.0 [c020b1a1] NaturalSort v1.0.0 [b8a86587] NearestNeighbors v0.4.15 [2f6b4ddb] NelderMead v0.4.0 [f09324ee] Netpbm v1.1.1 ⌅ [8913a72c] NonlinearSolve v1.6.0 [d8793406] ObjectFile v0.4.1 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.12.10 [0b1bfda6] OneHotArrays v0.2.4 [4d8831e6] OpenSSL v1.4.1 [429524aa] Optim v1.7.8 [3bd65402] Optimisers v0.3.1 [bac558e1] OrderedCollections v1.6.3 ⌃ [1dea7af3] OrdinaryDiffEq v6.50.0 [90014a1f] PDMats v0.11.31 ⌅ [f57f5aa1] PNGFiles v0.3.17 [65ce6f38] PackageExtensionCompat v1.0.2 [5432bcbf] PaddedViews v0.5.12 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.0 [fa939f87] Pidfile v1.3.0 [b98c9c47] Pipe v1.3.0 [9c9e696b] PkgServerClient v0.1.3 [ccf2f8ad] PlotThemes v3.1.0 [995b91a9] PlotUtils v1.3.5 [91a5bcdd] Plots v1.39.0 [e61b41b6] PointPatterns v0.7.0 [e409e4f3] PoissonRandom v0.4.4 [f517fe37] Polyester v0.7.9 [1d0040c9] PolyesterWeave v0.2.1 ⌅ [f27b6e38] Polynomials v3.2.13 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.12 [aea7be01] PrecompileTools v1.2.0 [21216c6a] Preferences v1.4.1 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v2.3.1 [27ebfcd6] Primes v0.5.5 [33c8b6b6] ProgressLogging v0.1.4 [92933f4c] ProgressMeter v1.9.0 [438e738f] PyCall v1.96.3 [d330b81b] PyPlot v2.11.2 [6099a3de] PythonCall v0.9.15 [274fc56d] PythonPlot v1.0.3 [1fd47b50] QuadGK v2.9.1 ⌅ [e29349eb] QuasiTriangular v0.1.0 [94ee1d12] Quaternions v0.7.5 ⌅ [df47a6cb] RData v0.8.3 [ce6b1742] RDatasets v0.7.7 [74087812] Random123 v1.6.1 [fb686558] RandomExtensions v0.4.4 [e6cf234a] RandomNumbers v1.5.3 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [01d81517] RecipesPipeline v0.6.12 [731186ca] RecursiveArrayTools v2.38.10 [f2c3362d] RecursiveFactorization v0.2.21 [189a3867] Reexport v1.2.2 [dee08c22] RegionTrees v0.3.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.0 [ae5879a3] ResettableStacks v1.1.1 [79098fc4] Rmath v0.7.1 [f2b01f46] Roots v2.0.22 [6038ab10] Rotations v1.6.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.12 [fdea26ae] SIMD v3.4.6 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.42 ⌅ [0bca4576] SciMLBase v1.97.0 [e9a6253c] SciMLNLSolve v0.1.9 [c0aeaf25] SciMLOperators v0.3.7 [321657f4] ScientificTypes v3.0.2 [30f210dd] ScientificTypesBase v3.0.0 [6e75b9c4] ScikitLearnBase v0.5.0 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.1 [efcf1570] Setfield v1.1.1 [1277b4bf] ShiftedArrays v2.0.0 [605ecd9f] ShowCases v0.1.0 [992d4aef] Showoff v1.0.3 [777ac1f9] SimpleBufferStream v1.1.0 ⌅ [727e6d20] SimpleNonlinearSolve v0.1.23 [699a6c99] SimpleTraits v0.9.4 [ce78b400] SimpleUnPack v1.1.0 [47aef6b3] SimpleWeightedGraphs v1.4.0 [66db9d55] SnoopPrecompile v1.0.3 [b85f4697] SoftGlobalScope v1.1.0 [a2af1166] SortingAlgorithms v1.2.0 ⌅ [47a9eef4] SparseDiffTools v1.31.0 [dc90abb0] SparseInverseSubset v0.1.1 [276daf66] SpecialFunctions v2.3.1 [03a91e81] SplitApplyCombine v1.2.2 [171d559e] SplittablesBase v0.1.15 [cae243ae] StackViews v0.1.1 [aedffcd0] Static v0.8.8 [0d7ed370] StaticArrayInterface v1.4.1 [90137ffa] StaticArrays v1.7.0 [1e83bf80] StaticArraysCore v1.4.2 [64bff920] StatisticalTraits v3.2.0 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.2 [4c63d2b9] StatsFuns v1.3.0 ⌃ [c146b59d] StatsLearnModels v0.2.3 [3eaba693] StatsModels v0.7.3 [f3b207a7] StatsPlots v0.15.6 ⌅ [9672c7b4] SteadyStateDiffEq v1.16.1 ⌃ [789caeaf] StochasticDiffEq v6.60.0 [7792a7ef] StrideArraysCore v0.5.2 [892a3eda] StringManipulation v0.3.4 [09ab397b] StructArrays v0.6.16 [53d494c1] StructIO v0.3.0 [856f2bd8] StructTypes v1.10.0 ⌃ [c3572dad] Sundials v4.20.1 [2efcf032] SymbolicIndexingInterface v0.2.2 [d1185830] SymbolicUtils v1.4.0 [0c5d862f] Symbolics v5.11.0 [dc5dba14] TZJData v1.0.0+2023c [ab02a1b2] TableOperations v1.2.0 [3783bdb8] TableTraits v1.0.1 ⌃ [0d432bfd] TableTransforms v1.16.0 [bd369af6] Tables v1.11.1 [62fd8b95] TensorCore v0.1.1 [5d786b92] TerminalLoggers v0.1.7 [8290d209] ThreadingUtilities v0.5.2 [06e1c1a7] TiledIteration v0.5.0 [9e3dc215] TimeSeries v0.24.1 [f269a46b] TimeZones v1.13.0 [a759f4b9] TimerOutputs v0.5.23 [9f7883ad] Tracker v0.2.30 [3bb67fe8] TranscodingStreams v0.10.2 [28d57a85] Transducers v0.4.79 [28dd2a49] TransformsBase v1.3.0 [d5829a12] TriangularSolve v0.1.20 [410a4b4d] Tricks v0.1.8 [781d530d] TruncatedStacktraces v1.4.0 [fce5fe82] Turing v0.29.3 [9d95f2ec] TypedTables v1.4.3 [5c2747f8] URIs v1.5.1 [3a884ed6] UnPack v1.0.2 [1cfade01] UnicodeFun v0.4.1 [1986cc42] Unitful v1.19.0 [45397f5d] UnitfulLatexify v1.6.3 [a7c27f48] Unityper v0.1.5 [013be700] UnsafeAtomics v0.2.1 [d80eeb9a] UnsafeAtomicsLLVM v0.1.3 [e17b2a0c] UnsafePointers v1.0.0 [41fe7b60] Unzip v0.2.0 ⌅ [04a0146e] Variography v0.19.0 [3d5dd08c] VectorizationBase v0.21.65 [81def892] VersionParsing v1.3.0 [19fa3120] VertexSafeGraphs v0.2.0 [ea10d353] WeakRefStrings v1.4.2 [cc8bc4a8] Widgets v0.6.6 [efce3f68] WoodburyMatrices v0.5.6 [76eceee3] WorkerUtilities v1.6.1 [c2297ded] ZMQ v1.2.2 [e88e6eb3] Zygote v0.6.67 [700de1a5] ZygoteRules v0.2.4 ⌅ [68821587] Arpack_jll v3.5.1+1 [6e34b625] Bzip2_jll v1.0.8+0 [83423d85] Cairo_jll v1.16.1+1 [7cc45869] Enzyme_jll v0.0.96+0 [2702e6a9] EpollShim_jll v0.0.20230411+0 [2e619515] Expat_jll v2.5.0+0 ⌃ [b22a6f82] FFMPEG_jll v4.4.2+2 [f5851436] FFTW_jll v3.3.10+0 [a3f928ae] Fontconfig_jll v2.13.93+0 [d7e528f0] FreeType2_jll v2.13.1+0 [559328eb] FriBidi_jll v1.0.10+0 [0656b61e] GLFW_jll v3.3.8+0 ⌅ [d2c73de3] GR_jll v0.72.8+0 [78b55507] Gettext_jll v0.21.0+0 [7746bdde] Glib_jll v2.76.5+0 [3b182d85] Graphite2_jll v1.3.14+0 [2e76f6c2] HarfBuzz_jll v2.8.1+1 ⌅ [c73af94c] ImageMagick_jll v6.9.10-12+3 [1d5cc7b8] IntelOpenMP_jll v2024.0.0+0 [aacddb02] JpegTurbo_jll v3.0.1+0 [c1c5ebd0] LAME_jll v3.100.1+0 [88015f11] LERC_jll v3.0.0+1 [dad2f222] LLVMExtra_jll v0.0.27+1 [1d63c593] LLVMOpenMP_jll v15.0.4+0 [dd4b983a] LZO_jll v2.10.1+0 ⌅ [e9f186c6] Libffi_jll v3.2.2+1 [d4300ac3] Libgcrypt_jll v1.8.7+0 [7e76a0d4] Libglvnd_jll v1.6.0+0 [7add5ba3] Libgpg_error_jll v1.42.0+0 [94ce4f54] Libiconv_jll v1.17.0+0 [4b2f31a3] Libmount_jll v2.35.0+0 ⌅ [89763e89] Libtiff_jll v4.4.0+0 [38a345b3] Libuuid_jll v2.36.0+0 [856f044c] MKL_jll v2024.0.0+0 [e7412a2a] Ogg_jll v1.3.5+1 ⌅ [458c3c95] OpenSSL_jll v1.1.23+0 [efe28fd5] OpenSpecFun_jll v0.5.5+0 [91d4177d] Opus_jll v1.3.2+0 [30392449] Pixman_jll v0.42.2+0 [ea2cea3b] Qt5Base_jll v5.15.3+2 [f50d1b31] Rmath_jll v0.4.0+0 ⌅ [fb77eaff] Sundials_jll v5.2.1+0 [a2964d1f] Wayland_jll v1.21.0+1 [2381bf8a] Wayland_protocols_jll v1.25.0+0 [02c8fc9c] XML2_jll v2.12.2+0 [aed1982a] XSLT_jll v1.1.34+0 [4f6342f7] Xorg_libX11_jll v1.8.6+0 [0c0b7dd1] Xorg_libXau_jll v1.0.11+0 [935fb764] Xorg_libXcursor_jll v1.2.0+4 [a3789734] Xorg_libXdmcp_jll v1.1.4+0 [1082639a] Xorg_libXext_jll v1.3.4+4 [d091e8ba] Xorg_libXfixes_jll v5.0.3+4 [a51aa0fd] Xorg_libXi_jll v1.7.10+4 [d1454406] Xorg_libXinerama_jll v1.1.4+4 [ec84b674] Xorg_libXrandr_jll v1.5.2+4 [ea2f1a96] Xorg_libXrender_jll v0.9.10+4 [14d82f49] Xorg_libpthread_stubs_jll v0.1.1+0 [c7cfdc94] Xorg_libxcb_jll v1.15.0+0 [cc61e674] Xorg_libxkbfile_jll v1.1.2+0 [12413925] Xorg_xcb_util_image_jll v0.4.0+1 [2def613f] Xorg_xcb_util_jll v0.4.0+1 [975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1 [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1 [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1 [35661453] Xorg_xkbcomp_jll v1.4.6+0 [33bec58e] Xorg_xkeyboard_config_jll v2.39.0+0 [c5fb5394] Xorg_xtrans_jll v1.5.0+0 [8f1865be] ZeroMQ_jll v4.3.4+0 [3161d3a3] Zstd_jll v1.5.5+0 [214eeab7] fzf_jll v0.43.0+0 [a4ae2306] libaom_jll v3.4.0+0 [0ac62f75] libass_jll v0.15.1+0 [f638f0a6] libfdk_aac_jll v2.0.2+0 [275f1f90] liblinear_jll v2.47.0+0 [b53b4c65] libpng_jll v1.6.40+0 [a9144af2] libsodium_jll v1.0.20+0 [08558c22] libsvm_jll v3.25.0+0 [f27f6e37] libvorbis_jll v1.3.7+1 [f8abcde7] micromamba_jll v1.4.9+0 [1270edf5] x264_jll v2021.5.5+0 [dfaa095f] x265_jll v3.5.0+0 [d8fb68d0] xkbcommon_jll v1.4.1+1 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.3 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.9.0 [de0858da] Printf [9abbd945] Profile [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays [10745b16] Statistics v1.9.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.0.2+0 [deac9b47] LibCURL_jll v7.84.0+0 [29816b5a] LibSSH2_jll v1.10.2+0 [c8ffd9c3] MbedTLS_jll v2.28.2+0 [14a3606d] MozillaCACerts_jll v2022.10.11 [4536629a] OpenBLAS_jll v0.3.21+4 [05823500] OpenLibm_jll v0.8.1+0 [efcefdf7] PCRE2_jll v10.42.0+0 [bea87d4a] SuiteSparse_jll v5.10.1+6 [83775a58] Zlib_jll v1.2.13+0 [8e850b90] libblastrampoline_jll v5.7.0+0 [8e850ede] nghttp2_jll v1.48.0+0 [3f19e933] p7zip_jll v17.4.0+0 Info Packages marked with ⌃ and ⌅ have new versions available, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use status --outdated -m

And finally, my version info julia> versioninfo() Julia Version 1.9.0 Commit 8e63055292 (2023-05-07 11:25 UTC) Platform Info: OS: Windows (x86_64-w64-mingw32) CPU: 8 × AMD Ryzen 5 3500U with Radeon Vega Mobile Gfx WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-14.0.6 (ORCJIT, znver1) Threads: 1 on 8 virtual cores Environment: JULIA_PKG_SERVER = https://mirrors.nju.edu.cn/julia

juliohm commented 11 months ago

Can you please try to install the project in a fresh environment? Try to follow Julia's best practices and avoid installing packages in your global environment along with every other package. Dozens of packages installed on the same environment will likely require different versions of dependencies, in this case TableTransforms.jl is fixed at an old version.

Em seg., 11 de dez. de 2023 02:44, crobro254 @.***> escreveu:

I'm new to Julia, maybe it's wrong with my environment, but using hints from REPL or Pkg I can't find a solution, nor did info on this error found by google search or issue search myself, so I raised this issue.

julia> using GeoStats [ Info: Precompiling GeoStats [dcc97b0b-8ce5-5539-9008-bb190f959ef6] WARNING: could not import TableTransforms.ColSpec into GeoStatsTransforms WARNING: could not import TableTransforms.Col into GeoStatsTransforms WARNING: could not import TableTransforms.AllSpec into GeoStatsTransforms WARNING: could not import TableTransforms.NoneSpec into GeoStatsTransforms WARNING: could not import TableTransforms.colspec into GeoStatsTransforms WARNING: could not import TableTransforms.choose into GeoStatsTransforms ERROR: LoadError: UndefVarError: ColSpec not defined Stacktrace: [1] top-level scope @ C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\uniquecoords.jl:5 [2] include(mod::Module, _path::String) @ Base .\Base.jl:457 [3] include(x::String) @ GeoStatsTransforms C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:5 [4] top-level scope @ C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:29 [5] include @ .\Base.jl:457 [inlined] [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base .\loading.jl:2010 [7] top-level scope @ stdin:2 in expression starting at C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\uniquecoords.jl:5 in expression starting at C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:5 in expression starting at stdin:2 ERROR: LoadError: Failed to precompile GeoStatsTransforms [725d9659-360f-4996-9c94-5f19c7e4a8a6] to "C:\Users\PV.julia\compiled\v1.9\GeoStatsTransforms\jl_19D2.tmp". Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:2260 [3] compilecache @ .\loading.jl:2127 [inlined] [4] _require(pkg::Base.PkgId, env::String) @ Base .\loading.jl:1770 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base .\loading.jl:1625 [6] macro expansion @ .\loading.jl:1613 [inlined] [7] macro expansion @ .\lock.jl:267 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1576 [9] include @ .\Base.jl:457 [inlined] [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base .\loading.jl:2010 [11] top-level scope @ stdin:2 in expression starting at C:\Users\PV.julia\packages\GeoStats\BQ7dR\src\GeoStats.jl:5 in expression starting at stdin:2 ERROR: Failed to precompile GeoStats [dcc97b0b-8ce5-5539-9008-bb190f959ef6] to "C:\Users\PV.julia\compiled\v1.9\GeoStats\jl_FE9D.tmp". Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:2260 [3] compilecache @ .\loading.jl:2127 [inlined] [4] _require(pkg::Base.PkgId, env::String) @ Base .\loading.jl:1770 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base .\loading.jl:1625 [6] macro expansion @ .\loading.jl:1613 [inlined] [7] macro expansion @ .\lock.jl:267 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1576

My packages versions are: @.***) pkg> status -m Status C:\Users\PV.julia\environments\v1.9\Manifest.toml [47edcb42] ADTypes v0.2.5 ⌅ [c3fe647b] AbstractAlgebra v0.33.0 [621f4979] AbstractFFTs v1.5.0 ⌅ [80f14c24] AbstractMCMC v4.4.2 ⌅ [7a57a42e] AbstractPPL v0.6.2 [1520ce14] AbstractTrees v0.4.4 [79e6a3ab] Adapt v3.7.2 ⌅ [0bf59076] AdvancedHMC v0.5.5 ⌅ [5b7e9947] AdvancedMH v0.7.4 ⌅ [576499cb] AdvancedPS v0.4.3 [b5ca4192] AdvancedVI v0.2.4 [dce04be8] ArgCheck v2.3.0 ⌅ [ec485272] ArnoldiMethod v0.1.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.6.1 [30b0a656] ArrayInterfaceCore v0.1.29 ⌃ [4c555306] ArrayLayouts v0.8.18 [a9b6321e] Atomix v0.1.0 [13072b0f] AxisAlgorithms v1.0.1 [39de3d68] AxisArrays v0.4.7 ⌅ [aae01518] BandedMatrices v0.17.18 [198e06fe] BangBang v0.3.39 [9718e550] Baselet v0.1.1 [6e4b80f9] BenchmarkTools v1.4.0 [0e736298] Bessels v0.2.8 [e2ed5e7c] Bijections v0.1.6 [76274a88] Bijectors v0.13.8 [d1d4a3ce] BitFlags v0.1.8 [62783981] BitTwiddlingConvenienceFunctions v0.1.5 ⌅ [764a87c0] BoundaryValueDiffEq v2.11.0 ⌅ [fa961155] CEnum v0.4.2 [2a0fbf3d] CPUSummary v0.2.4 [336ed68f] CSV v0.10.11 [49dc2e85] Calculus v0.5.1 [aafaddc9] CatIndices v0.2.2 [324d7699] CategoricalArrays v0.10.8 [8be319e6] Chain v0.5.0 [082447d4] ChainRules v1.58.0 [d360d2e6] ChainRulesCore v1.18.0 [9e997f8a] ChangesOfVariables v0.1.8 [7a955b69] CircularArrays v1.3.3 [fb6a15b2] CloseOpenIntervals v0.1.12 [aaaa29a8] Clustering v0.15.5 [944b1d66] CodecZlib v0.7.3 [35d6a980] ColorSchemes v3.24.0 [3da002f7] ColorTypes v0.11.4 ⌅ [c3611d14] ColorVectorSpace v0.9.10 [5ae59095] Colors v0.12.10 [9cc86067] ColumnSelectors v0.1.1 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.0 [34da2185] Compat v4.10.1 [b152e2b5] CompositeTypes v0.1.3 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.3.0 [8f4d0f93] Conda v1.10.0 [992eb4ea] CondaPkg v0.2.22 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.5.4 [6add18c4] ContextVariablesX v0.1.3 [d38c429a] Contour v0.6.2 [150eb455] CoordinateTransformations v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [dc8bdbbb] CustomUnitRanges v1.0.2 [717857b8] DSP v0.7.9 [9a962f9c] DataAPI v1.15.0 [a93c6f00] DataFrames v1.6.1 ⌅ [6cb2f572] DataScienceTraits v0.1.0 [864edb3b] DataStructures v0.18.15 [e2d170a0] DataValueInterfaces v1.0.0 [7806a523] DecisionTree v0.12.4 [244e2a9f] DefineSingletons v0.1.2 [bcd4f6db] DelayDiffEq v5.43.2 [8bb1440f] DelimitedFiles v1.9.1 [b429d917] DensityInterface v0.4.0 [ab46fb84] DensityRatioEstimation v1.2.1 [85a47980] Dictionaries v0.3.25 ⌃ [2b5f629d] DiffEqBase v6.130.0 [459566f4] DiffEqCallbacks v2.34.0 [77a26b50] DiffEqNoiseProcess v5.19.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [e0ca9c66] DifferenceEquations v0.5.3 [beacd9db] DifferentiableStateSpaceModels v0.5.3 ⌃ [0c46a032] DifferentialEquations v7.7.0 [b4f34e82] Distances v0.10.11 [31c24e10] 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v2021.5.5+0 [dfaa095f] x265_jll v3.5.0+0 [d8fb68d0] xkbcommon_jll v1.4.1+1 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.3 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.9.0 [de0858da] Printf [9abbd945] Profile [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays [10745b16] Statistics v1.9.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.0.2+0 [deac9b47] LibCURL_jll v7.84.0+0 [29816b5a] LibSSH2_jll v1.10.2+0 [c8ffd9c3] MbedTLS_jll v2.28.2+0 [14a3606d] MozillaCACerts_jll v2022.10.11 [4536629a] OpenBLAS_jll v0.3.21+4 [05823500] OpenLibm_jll v0.8.1+0 [efcefdf7] PCRE2_jll v10.42.0+0 [bea87d4a] SuiteSparse_jll v5.10.1+6 [83775a58] Zlib_jll v1.2.13+0 [8e850b90] libblastrampoline_jll v5.7.0+0 [8e850ede] nghttp2_jll v1.48.0+0 [3f19e933] p7zip_jll v17.4.0+0 Info Packages marked with ⌃ and ⌅ have new versions available, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use status --outdated -m

And finally, my version info julia> versioninfo() Julia Version 1.9.0 Commit 8e63055292 (2023-05-07 11:25 UTC) Platform Info: OS: Windows (x86_64-w64-mingw32) CPU: 8 × AMD Ryzen 5 3500U with Radeon Vega Mobile Gfx WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-14.0.6 (ORCJIT, znver1) Threads: 1 on 8 virtual cores Environment: JULIA_PKG_SERVER = https://mirrors.nju.edu.cn/julia

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crobro254 commented 11 months ago

Thanks for reply, I've yet to know how to configure an environment yet, but after removing some package then updating the GeoStats to 0.48.2, I'd resolved it, the problem could very possibly caused by DifferentiableStateSpace package, which not compatible with new versions of some package. It's up to me then to get familiar with environment control.

Can you please try to install the project in a fresh environment? Try to follow Julia's best practices and avoid installing packages in your global environment along with every other package. Dozens of packages installed on the same environment will likely require different versions of dependencies, in this case TableTransforms.jl is fixed at an old version. Em seg., 11 de dez. de 2023 02:44, crobro254 @.> escreveu: I'm new to Julia, maybe it's wrong with my environment, but using hints from REPL or Pkg I can't find a solution, nor did info on this error found by google search or issue search myself, so I raised this issue. julia> using GeoStats [ Info: Precompiling GeoStats [dcc97b0b-8ce5-5539-9008-bb190f959ef6] WARNING: could not import TableTransforms.ColSpec into GeoStatsTransforms WARNING: could not import TableTransforms.Col into GeoStatsTransforms WARNING: could not import TableTransforms.AllSpec into GeoStatsTransforms WARNING: could not import TableTransforms.NoneSpec into GeoStatsTransforms WARNING: could not import TableTransforms.colspec into GeoStatsTransforms WARNING: could not import TableTransforms.choose into GeoStatsTransforms ERROR: LoadError: UndefVarError: ColSpec not defined Stacktrace: [1] top-level scope @ C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\uniquecoords.jl:5 [2] include(mod::Module, _path::String) @ Base .\Base.jl:457 [3] include(x::String) @ GeoStatsTransforms C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:5 [4] top-level scope @ C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:29 [5] include @ .\Base.jl:457 [inlined] [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base .\loading.jl:2010 [7] top-level scope @ stdin:2 in expression starting at C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\uniquecoords.jl:5 in expression starting at C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:5 in expression starting at stdin:2 ERROR: LoadError: Failed to precompile GeoStatsTransforms [725d9659-360f-4996-9c94-5f19c7e4a8a6] to "C:\Users\PV.julia\compiled\v1.9\GeoStatsTransforms\jl_19D2.tmp". Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:2260 [3] compilecache @ .\loading.jl:2127 [inlined] [4] _require(pkg::Base.PkgId, env::String) @ Base .\loading.jl:1770 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base .\loading.jl:1625 [6] macro expansion @ .\loading.jl:1613 [inlined] [7] macro expansion @ .\lock.jl:267 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1576 [9] include @ .\Base.jl:457 [inlined] [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base .\loading.jl:2010 [11] top-level scope @ stdin:2 in expression starting at C:\Users\PV.julia\packages\GeoStats\BQ7dR\src\GeoStats.jl:5 in expression starting at stdin:2 ERROR: Failed to precompile GeoStats [dcc97b0b-8ce5-5539-9008-bb190f959ef6] to "C:\Users\PV.julia\compiled\v1.9\GeoStats\jl_FE9D.tmp". Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:2260 [3] compilecache @ .\loading.jl:2127 [inlined] [4] _require(pkg::Base.PkgId, env::String) @ Base .\loading.jl:1770 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base .\loading.jl:1625 [6] macro expansion @ .\loading.jl:1613 [inlined] [7] macro expansion @ .\lock.jl:267 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1576 My packages versions are: @.) pkg> status -m Status C:\Users\PV.julia\environments\v1.9\Manifest.toml [47edcb42] ADTypes v0.2.5 ⌅ [c3fe647b] AbstractAlgebra v0.33.0 [621f4979] AbstractFFTs v1.5.0 ⌅ [80f14c24] AbstractMCMC v4.4.2 ⌅ [7a57a42e] AbstractPPL v0.6.2 [1520ce14] AbstractTrees v0.4.4 [79e6a3ab] Adapt v3.7.2 ⌅ [0bf59076] AdvancedHMC v0.5.5 ⌅ [5b7e9947] AdvancedMH v0.7.4 ⌅ [576499cb] AdvancedPS v0.4.3 [b5ca4192] AdvancedVI v0.2.4 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To see why use status --outdated -m And finally, my version info julia> versioninfo() Julia Version 1.9.0 Commit 8e63055292 (2023-05-07 11:25 UTC) Platform Info: OS: Windows (x86_64-w64-mingw32) CPU: 8 × AMD Ryzen 5 3500U with Radeon Vega Mobile Gfx WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-14.0.6 (ORCJIT, znver1) Threads: 1 on 8 virtual cores Environment: JULIA_PKG_SERVER = https://mirrors.nju.edu.cn/julia — Reply to this email directly, view it on GitHub <#358>, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAZQW3JYO65OWH4SDR42C3DYI2MSRAVCNFSM6AAAAABAPGCUNGVHI2DSMVQWIX3LMV43ASLTON2WKOZSGAZTIOBXGUZDKOI . You are receiving this because you are subscribed to this thread.Message ID: @.***>

juliohm commented 11 months ago

Environments in Julia are super easy to manage. You can simply use the package manager Pkg to activate a (new) environment in a project folder:

Pkg.activate(".")

Then add the packages as usual only for that folder.

You can also activate global environments to use across folders with similar dependencies using the @ syntax:

@.***")

You can then switch to any of these environments later with the same activate command.

By default you only get one global environment with the name @v1.9 in Julia v1.9.

Feel free to close the issue and continue the discussion on our Zulip channel.

Em seg., 11 de dez. de 2023 06:54, crobro254 @.***> escreveu:

Thanks for reply, I've yet to know how to configure an environment yet, but after removing some package then updating the GeoStats to 0.48.2, I'd resolved it, the problem could very possibly caused by DifferentiableStateSpace package, which not compatible with new versions of some package. It's up to me then to get familiar with environment control.

Can you please try to install the project in a fresh environment? Try to follow Julia's best practices and avoid installing packages in your global environment along with every other package. Dozens of packages installed on the same environment will likely require different versions of dependencies, in this case TableTransforms.jl is fixed at an old version. Em seg., 11 de dez. de 2023 02:44, crobro254 @.

> escreveu: … <#m-1304389337926747103> I'm new to Julia, maybe it's wrong with my environment, but using hints from REPL or Pkg I can't find a solution, nor did info on this error found by google search or issue search myself, so I raised this issue. julia> using GeoStats [ Info: Precompiling GeoStats [dcc97b0b-8ce5-5539-9008-bb190f959ef6] WARNING: could not import TableTransforms.ColSpec into GeoStatsTransforms WARNING: could not import TableTransforms.Col into GeoStatsTransforms WARNING: could not import TableTransforms.AllSpec into GeoStatsTransforms WARNING: could not import TableTransforms.NoneSpec into GeoStatsTransforms WARNING: could not import TableTransforms.colspec into GeoStatsTransforms WARNING: could not import TableTransforms.choose into GeoStatsTransforms ERROR: LoadError: UndefVarError: ColSpec not defined Stacktrace: [1] top-level scope @ C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\uniquecoords.jl:5 [2] include(mod::Module, _path::String) @ Base .\Base.jl:457 [3] include(x::String) @ GeoStatsTransforms C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:5 [4] top-level scope @ C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:29 [5] include @ .\Base.jl:457 [inlined] [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base .\loading.jl:2010 [7] top-level scope @ stdin:2 in expression starting at C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\uniquecoords.jl:5 in expression starting at C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:5 in expression starting at stdin:2 ERROR: LoadError: Failed to precompile GeoStatsTransforms [725d9659-360f-4996-9c94-5f19c7e4a8a6] to "C:\Users\PV.julia\compiled\v1.9\GeoStatsTransforms\jl_19D2.tmp". Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:2260 [3] compilecache @ .\loading.jl:2127 [inlined] [4] _require(pkg::Base.PkgId, env::String) @ Base .\loading.jl:1770 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base .\loading.jl:1625 [6] macro expansion @ .\loading.jl:1613 [inlined] [7] macro expansion @ .\lock.jl:267 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1576 [9] include @ .\Base.jl:457 [inlined] [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base .\loading.jl:2010 [11] top-level scope @ stdin:2 in expression starting at C:\Users\PV.julia\packages\GeoStats\BQ7dR\src\GeoStats.jl:5 in expression starting at stdin:2 ERROR: Failed to precompile GeoStats [dcc97b0b-8ce5-5539-9008-bb190f959ef6] to "C:\Users\PV.julia\compiled\v1.9\GeoStats\jl_FE9D.tmp". Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:2260 [3] compilecache @ .\loading.jl:2127 [inlined] [4] _require(pkg::Base.PkgId, env::String) @ Base .\loading.jl:1770 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base .\loading.jl:1625 [6] macro expansion @ .\loading.jl:1613 [inlined] [7] macro expansion @ .\lock.jl:267 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1576 My packages versions are: @.) pkg> status -m Status C:\Users\PV.julia\environments\v1.9\Manifest.toml [47edcb42] ADTypes v0.2.5 ⌅ [c3fe647b] AbstractAlgebra v0.33.0 [621f4979] AbstractFFTs v1.5.0 ⌅ [80f14c24] AbstractMCMC v4.4.2 ⌅ [7a57a42e] AbstractPPL v0.6.2 [1520ce14] AbstractTrees v0.4.4 [79e6a3ab] Adapt v3.7.2 ⌅ [0bf59076] AdvancedHMC v0.5.5 ⌅ [5b7e9947] AdvancedMH v0.7.4 ⌅ [576499cb] AdvancedPS v0.4.3 [b5ca4192] AdvancedVI v0.2.4 [dce04be8] ArgCheck v2.3.0 ⌅ [ec485272] ArnoldiMethod v0.1.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.6.1 [30b0a656] ArrayInterfaceCore v0.1.29 ⌃ [4c555306] ArrayLayouts v0.8.18 [a9b6321e] Atomix v0.1.0 [13072b0f] AxisAlgorithms v1.0.1 [39de3d68] AxisArrays v0.4.7 ⌅ [aae01518] BandedMatrices v0.17.18 [198e06fe] BangBang v0.3.39 [9718e550] Baselet v0.1.1 [6e4b80f9] BenchmarkTools v1.4.0 [0e736298] Bessels v0.2.8 [e2ed5e7c] Bijections v0.1.6 [76274a88] Bijectors v0.13.8 [d1d4a3ce] BitFlags v0.1.8 [62783981] BitTwiddlingConvenienceFunctions v0.1.5 ⌅ [764a87c0] BoundaryValueDiffEq v2.11.0 ⌅ [fa961155] CEnum v0.4.2 [2a0fbf3d] CPUSummary v0.2.4 [336ed68f] CSV v0.10.11 [49dc2e85] Calculus v0.5.1 [aafaddc9] CatIndices v0.2.2 [324d7699] CategoricalArrays v0.10.8 [8be319e6] Chain v0.5.0 [082447d4] ChainRules v1.58.0 [d360d2e6] ChainRulesCore v1.18.0 [9e997f8a] ChangesOfVariables v0.1.8 [7a955b69] CircularArrays v1.3.3 [fb6a15b2] CloseOpenIntervals v0.1.12 [aaaa29a8] Clustering 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To see why use status --outdated -m And finally, my version info julia> versioninfo() Julia Version 1.9.0 Commit 8e63055292 (2023-05-07 11:25 UTC) Platform Info: OS: Windows (x86_64-w64-mingw32) CPU: 8 × AMD Ryzen 5 3500U with Radeon Vega Mobile Gfx WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-14.0.6 (ORCJIT, znver1) Threads: 1 on 8 virtual cores Environment: JULIA_PKG_SERVER = https://mirrors.nju.edu.cn/julia — Reply to this email directly, view it on GitHub <#358 https://github.com/JuliaEarth/GeoStats.jl/issues/358>, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAZQW3JYO65OWH4SDR42C3DYI2MSRAVCNFSM6AAAAABAPGCUNGVHI2DSMVQWIX3LMV43ASLTON2WKOZSGAZTIOBXGUZDKOI . You are receiving this because you are subscribed to this thread.Message ID: @.***>

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