Closed crobro254 closed 11 months ago
Can you please try to install the project in a fresh environment? Try to follow Julia's best practices and avoid installing packages in your global environment along with every other package. Dozens of packages installed on the same environment will likely require different versions of dependencies, in this case TableTransforms.jl is fixed at an old version.
Em seg., 11 de dez. de 2023 02:44, crobro254 @.***> escreveu:
I'm new to Julia, maybe it's wrong with my environment, but using hints from REPL or Pkg I can't find a solution, nor did info on this error found by google search or issue search myself, so I raised this issue.
julia> using GeoStats [ Info: Precompiling GeoStats [dcc97b0b-8ce5-5539-9008-bb190f959ef6] WARNING: could not import TableTransforms.ColSpec into GeoStatsTransforms WARNING: could not import TableTransforms.Col into GeoStatsTransforms WARNING: could not import TableTransforms.AllSpec into GeoStatsTransforms WARNING: could not import TableTransforms.NoneSpec into GeoStatsTransforms WARNING: could not import TableTransforms.colspec into GeoStatsTransforms WARNING: could not import TableTransforms.choose into GeoStatsTransforms ERROR: LoadError: UndefVarError: ColSpec not defined Stacktrace: [1] top-level scope @ C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\uniquecoords.jl:5 [2] include(mod::Module, _path::String) @ Base .\Base.jl:457 [3] include(x::String) @ GeoStatsTransforms C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:5 [4] top-level scope @ C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:29 [5] include @ .\Base.jl:457 [inlined] [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base .\loading.jl:2010 [7] top-level scope @ stdin:2 in expression starting at C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\uniquecoords.jl:5 in expression starting at C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:5 in expression starting at stdin:2 ERROR: LoadError: Failed to precompile GeoStatsTransforms [725d9659-360f-4996-9c94-5f19c7e4a8a6] to "C:\Users\PV.julia\compiled\v1.9\GeoStatsTransforms\jl_19D2.tmp". Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:2260 [3] compilecache @ .\loading.jl:2127 [inlined] [4] _require(pkg::Base.PkgId, env::String) @ Base .\loading.jl:1770 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base .\loading.jl:1625 [6] macro expansion @ .\loading.jl:1613 [inlined] [7] macro expansion @ .\lock.jl:267 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1576 [9] include @ .\Base.jl:457 [inlined] [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base .\loading.jl:2010 [11] top-level scope @ stdin:2 in expression starting at C:\Users\PV.julia\packages\GeoStats\BQ7dR\src\GeoStats.jl:5 in expression starting at stdin:2 ERROR: Failed to precompile GeoStats [dcc97b0b-8ce5-5539-9008-bb190f959ef6] to "C:\Users\PV.julia\compiled\v1.9\GeoStats\jl_FE9D.tmp". Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:2260 [3] compilecache @ .\loading.jl:2127 [inlined] [4] _require(pkg::Base.PkgId, env::String) @ Base .\loading.jl:1770 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base .\loading.jl:1625 [6] macro expansion @ .\loading.jl:1613 [inlined] [7] macro expansion @ .\lock.jl:267 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1576
My packages versions are: @.***) pkg> status -m Status C:\Users\PV.julia\environments\v1.9\Manifest.toml [47edcb42] ADTypes v0.2.5 ⌅ [c3fe647b] AbstractAlgebra v0.33.0 [621f4979] AbstractFFTs v1.5.0 ⌅ [80f14c24] AbstractMCMC v4.4.2 ⌅ [7a57a42e] AbstractPPL v0.6.2 [1520ce14] AbstractTrees v0.4.4 [79e6a3ab] Adapt v3.7.2 ⌅ [0bf59076] AdvancedHMC v0.5.5 ⌅ [5b7e9947] AdvancedMH v0.7.4 ⌅ [576499cb] AdvancedPS v0.4.3 [b5ca4192] AdvancedVI v0.2.4 [dce04be8] ArgCheck v2.3.0 ⌅ [ec485272] ArnoldiMethod v0.1.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.6.1 [30b0a656] ArrayInterfaceCore v0.1.29 ⌃ [4c555306] ArrayLayouts v0.8.18 [a9b6321e] Atomix v0.1.0 [13072b0f] AxisAlgorithms v1.0.1 [39de3d68] AxisArrays v0.4.7 ⌅ [aae01518] BandedMatrices v0.17.18 [198e06fe] BangBang v0.3.39 [9718e550] Baselet v0.1.1 [6e4b80f9] BenchmarkTools v1.4.0 [0e736298] Bessels v0.2.8 [e2ed5e7c] Bijections v0.1.6 [76274a88] Bijectors v0.13.8 [d1d4a3ce] BitFlags v0.1.8 [62783981] BitTwiddlingConvenienceFunctions v0.1.5 ⌅ [764a87c0] BoundaryValueDiffEq v2.11.0 ⌅ [fa961155] CEnum v0.4.2 [2a0fbf3d] CPUSummary v0.2.4 [336ed68f] CSV v0.10.11 [49dc2e85] Calculus v0.5.1 [aafaddc9] CatIndices v0.2.2 [324d7699] CategoricalArrays v0.10.8 [8be319e6] Chain v0.5.0 [082447d4] ChainRules v1.58.0 [d360d2e6] ChainRulesCore v1.18.0 [9e997f8a] ChangesOfVariables v0.1.8 [7a955b69] CircularArrays v1.3.3 [fb6a15b2] CloseOpenIntervals v0.1.12 [aaaa29a8] Clustering v0.15.5 [944b1d66] CodecZlib v0.7.3 [35d6a980] ColorSchemes v3.24.0 [3da002f7] ColorTypes v0.11.4 ⌅ [c3611d14] ColorVectorSpace v0.9.10 [5ae59095] Colors v0.12.10 [9cc86067] ColumnSelectors v0.1.1 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.0 [34da2185] Compat v4.10.1 [b152e2b5] CompositeTypes v0.1.3 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.3.0 [8f4d0f93] Conda v1.10.0 [992eb4ea] CondaPkg v0.2.22 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.5.4 [6add18c4] ContextVariablesX v0.1.3 [d38c429a] Contour v0.6.2 [150eb455] CoordinateTransformations v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [dc8bdbbb] CustomUnitRanges v1.0.2 [717857b8] DSP v0.7.9 [9a962f9c] DataAPI v1.15.0 [a93c6f00] DataFrames v1.6.1 ⌅ [6cb2f572] DataScienceTraits v0.1.0 [864edb3b] DataStructures v0.18.15 [e2d170a0] DataValueInterfaces v1.0.0 [7806a523] DecisionTree v0.12.4 [244e2a9f] DefineSingletons v0.1.2 [bcd4f6db] DelayDiffEq v5.43.2 [8bb1440f] DelimitedFiles v1.9.1 [b429d917] DensityInterface v0.4.0 [ab46fb84] DensityRatioEstimation v1.2.1 [85a47980] Dictionaries v0.3.25 ⌃ [2b5f629d] DiffEqBase v6.130.0 [459566f4] DiffEqCallbacks v2.34.0 [77a26b50] DiffEqNoiseProcess v5.19.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [e0ca9c66] DifferenceEquations v0.5.3 [beacd9db] DifferentiableStateSpaceModels v0.5.3 ⌃ [0c46a032] DifferentialEquations v7.7.0 [b4f34e82] Distances v0.10.11 [31c24e10] 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[d1454406] Xorg_libXinerama_jll v1.1.4+4 [ec84b674] Xorg_libXrandr_jll v1.5.2+4 [ea2f1a96] Xorg_libXrender_jll v0.9.10+4 [14d82f49] Xorg_libpthread_stubs_jll v0.1.1+0 [c7cfdc94] Xorg_libxcb_jll v1.15.0+0 [cc61e674] Xorg_libxkbfile_jll v1.1.2+0 [12413925] Xorg_xcb_util_image_jll v0.4.0+1 [2def613f] Xorg_xcb_util_jll v0.4.0+1 [975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1 [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1 [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1 [35661453] Xorg_xkbcomp_jll v1.4.6+0 [33bec58e] Xorg_xkeyboard_config_jll v2.39.0+0 [c5fb5394] Xorg_xtrans_jll v1.5.0+0 [8f1865be] ZeroMQ_jll v4.3.4+0 [3161d3a3] Zstd_jll v1.5.5+0 [214eeab7] fzf_jll v0.43.0+0 [a4ae2306] libaom_jll v3.4.0+0 [0ac62f75] libass_jll v0.15.1+0 [f638f0a6] libfdk_aac_jll v2.0.2+0 [275f1f90] liblinear_jll v2.47.0+0 [b53b4c65] libpng_jll v1.6.40+0 [a9144af2] libsodium_jll v1.0.20+0 [08558c22] libsvm_jll v3.25.0+0 [f27f6e37] libvorbis_jll v1.3.7+1 [f8abcde7] micromamba_jll v1.4.9+0 [1270edf5] x264_jll v2021.5.5+0 [dfaa095f] x265_jll v3.5.0+0 [d8fb68d0] xkbcommon_jll v1.4.1+1 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.3 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.9.0 [de0858da] Printf [9abbd945] Profile [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays [10745b16] Statistics v1.9.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.0.2+0 [deac9b47] LibCURL_jll v7.84.0+0 [29816b5a] LibSSH2_jll v1.10.2+0 [c8ffd9c3] MbedTLS_jll v2.28.2+0 [14a3606d] MozillaCACerts_jll v2022.10.11 [4536629a] OpenBLAS_jll v0.3.21+4 [05823500] OpenLibm_jll v0.8.1+0 [efcefdf7] PCRE2_jll v10.42.0+0 [bea87d4a] SuiteSparse_jll v5.10.1+6 [83775a58] Zlib_jll v1.2.13+0 [8e850b90] libblastrampoline_jll v5.7.0+0 [8e850ede] nghttp2_jll v1.48.0+0 [3f19e933] p7zip_jll v17.4.0+0 Info Packages marked with ⌃ and ⌅ have new versions available, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use status --outdated -m
And finally, my version info julia> versioninfo() Julia Version 1.9.0 Commit 8e63055292 (2023-05-07 11:25 UTC) Platform Info: OS: Windows (x86_64-w64-mingw32) CPU: 8 × AMD Ryzen 5 3500U with Radeon Vega Mobile Gfx WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-14.0.6 (ORCJIT, znver1) Threads: 1 on 8 virtual cores Environment: JULIA_PKG_SERVER = https://mirrors.nju.edu.cn/julia
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Thanks for reply, I've yet to know how to configure an environment yet, but after removing some package then updating the GeoStats to 0.48.2, I'd resolved it, the problem could very possibly caused by DifferentiableStateSpace package, which not compatible with new versions of some package. It's up to me then to get familiar with environment control.
Can you please try to install the project in a fresh environment? Try to follow Julia's best practices and avoid installing packages in your global environment along with every other package. Dozens of packages installed on the same environment will likely require different versions of dependencies, in this case TableTransforms.jl is fixed at an old version. Em seg., 11 de dez. de 2023 02:44, crobro254 @.> escreveu: … I'm new to Julia, maybe it's wrong with my environment, but using hints from REPL or Pkg I can't find a solution, nor did info on this error found by google search or issue search myself, so I raised this issue. julia> using GeoStats [ Info: Precompiling GeoStats [dcc97b0b-8ce5-5539-9008-bb190f959ef6] WARNING: could not import TableTransforms.ColSpec into GeoStatsTransforms WARNING: could not import TableTransforms.Col into GeoStatsTransforms WARNING: could not import TableTransforms.AllSpec into GeoStatsTransforms WARNING: could not import TableTransforms.NoneSpec into GeoStatsTransforms WARNING: could not import TableTransforms.colspec into GeoStatsTransforms WARNING: could not import TableTransforms.choose into GeoStatsTransforms ERROR: LoadError: UndefVarError: ColSpec not defined Stacktrace: [1] top-level scope @ C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\uniquecoords.jl:5 [2] include(mod::Module, _path::String) @ Base .\Base.jl:457 [3] include(x::String) @ GeoStatsTransforms C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:5 [4] top-level scope @ C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:29 [5] include @ .\Base.jl:457 [inlined] [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base .\loading.jl:2010 [7] top-level scope @ stdin:2 in expression starting at C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\uniquecoords.jl:5 in expression starting at C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:5 in expression starting at stdin:2 ERROR: LoadError: Failed to precompile GeoStatsTransforms [725d9659-360f-4996-9c94-5f19c7e4a8a6] to "C:\Users\PV.julia\compiled\v1.9\GeoStatsTransforms\jl_19D2.tmp". Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:2260 [3] compilecache @ .\loading.jl:2127 [inlined] [4] _require(pkg::Base.PkgId, env::String) @ Base .\loading.jl:1770 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base .\loading.jl:1625 [6] macro expansion @ .\loading.jl:1613 [inlined] [7] macro expansion @ .\lock.jl:267 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1576 [9] include @ .\Base.jl:457 [inlined] [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base .\loading.jl:2010 [11] top-level scope @ stdin:2 in expression starting at C:\Users\PV.julia\packages\GeoStats\BQ7dR\src\GeoStats.jl:5 in expression starting at stdin:2 ERROR: Failed to precompile GeoStats [dcc97b0b-8ce5-5539-9008-bb190f959ef6] to "C:\Users\PV.julia\compiled\v1.9\GeoStats\jl_FE9D.tmp". Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:2260 [3] compilecache @ .\loading.jl:2127 [inlined] [4] _require(pkg::Base.PkgId, env::String) @ Base .\loading.jl:1770 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base .\loading.jl:1625 [6] macro expansion @ .\loading.jl:1613 [inlined] [7] macro expansion @ .\lock.jl:267 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1576 My packages versions are: @.) pkg> status -m Status C:\Users\PV.julia\environments\v1.9\Manifest.toml [47edcb42] ADTypes v0.2.5 ⌅ [c3fe647b] AbstractAlgebra v0.33.0 [621f4979] AbstractFFTs v1.5.0 ⌅ [80f14c24] AbstractMCMC v4.4.2 ⌅ [7a57a42e] AbstractPPL v0.6.2 [1520ce14] AbstractTrees v0.4.4 [79e6a3ab] Adapt v3.7.2 ⌅ [0bf59076] AdvancedHMC v0.5.5 ⌅ [5b7e9947] AdvancedMH v0.7.4 ⌅ [576499cb] AdvancedPS v0.4.3 [b5ca4192] AdvancedVI v0.2.4 [dce04be8] ArgCheck v2.3.0 ⌅ [ec485272] ArnoldiMethod v0.1.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.6.1 [30b0a656] ArrayInterfaceCore v0.1.29 ⌃ [4c555306] ArrayLayouts v0.8.18 [a9b6321e] Atomix v0.1.0 [13072b0f] AxisAlgorithms v1.0.1 [39de3d68] AxisArrays v0.4.7 ⌅ [aae01518] BandedMatrices v0.17.18 [198e06fe] BangBang v0.3.39 [9718e550] Baselet v0.1.1 [6e4b80f9] BenchmarkTools v1.4.0 [0e736298] Bessels v0.2.8 [e2ed5e7c] Bijections v0.1.6 [76274a88] Bijectors v0.13.8 [d1d4a3ce] BitFlags v0.1.8 [62783981] BitTwiddlingConvenienceFunctions v0.1.5 ⌅ [764a87c0] BoundaryValueDiffEq v2.11.0 ⌅ [fa961155] CEnum v0.4.2 [2a0fbf3d] CPUSummary v0.2.4 [336ed68f] CSV v0.10.11 [49dc2e85] Calculus v0.5.1 [aafaddc9] CatIndices v0.2.2 [324d7699] CategoricalArrays v0.10.8 [8be319e6] Chain v0.5.0 [082447d4] ChainRules v1.58.0 [d360d2e6] ChainRulesCore v1.18.0 [9e997f8a] ChangesOfVariables v0.1.8 [7a955b69] CircularArrays v1.3.3 [fb6a15b2] CloseOpenIntervals v0.1.12 [aaaa29a8] Clustering v0.15.5 [944b1d66] CodecZlib v0.7.3 [35d6a980] ColorSchemes v3.24.0 [3da002f7] ColorTypes v0.11.4 ⌅ [c3611d14] ColorVectorSpace v0.9.10 [5ae59095] Colors v0.12.10 [9cc86067] ColumnSelectors v0.1.1 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.0 [34da2185] Compat v4.10.1 [b152e2b5] CompositeTypes v0.1.3 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.3.0 [8f4d0f93] Conda v1.10.0 [992eb4ea] CondaPkg v0.2.22 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.5.4 [6add18c4] ContextVariablesX v0.1.3 [d38c429a] Contour v0.6.2 [150eb455] CoordinateTransformations v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [dc8bdbbb] CustomUnitRanges v1.0.2 [717857b8] DSP v0.7.9 [9a962f9c] DataAPI v1.15.0 [a93c6f00] DataFrames v1.6.1 ⌅ [6cb2f572] DataScienceTraits v0.1.0 [864edb3b] DataStructures v0.18.15 [e2d170a0] DataValueInterfaces v1.0.0 [7806a523] DecisionTree v0.12.4 [244e2a9f] DefineSingletons v0.1.2 [bcd4f6db] DelayDiffEq v5.43.2 [8bb1440f] DelimitedFiles v1.9.1 [b429d917] DensityInterface v0.4.0 [ab46fb84] DensityRatioEstimation v1.2.1 [85a47980] Dictionaries v0.3.25 ⌃ [2b5f629d] DiffEqBase v6.130.0 [459566f4] DiffEqCallbacks v2.34.0 [77a26b50] DiffEqNoiseProcess v5.19.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [e0ca9c66] DifferenceEquations v0.5.3 [beacd9db] DifferentiableStateSpaceModels v0.5.3 ⌃ [0c46a032] DifferentialEquations v7.7.0 [b4f34e82] Distances v0.10.11 [31c24e10] Distributions v0.25.104 ⌃ [ced4e74d] DistributionsAD v0.6.50 [ffbed154] DocStringExtensions v0.9.3 ⌅ [5b8099bc] DomainSets v0.6.7 [fa6b7ba4] DualNumbers v0.6.8 ⌅ [366bfd00] DynamicPPL v0.23.21 [7c1d4256] DynamicPolynomials v0.5.3 ⌅ [cad2338a] EllipticalSliceSampling v1.1.0 [4e289a0a] EnumX v1.0.4 [7da242da] Enzyme v0.11.11 [f151be2c] EnzymeCore v0.6.4 [460bff9d] ExceptionUnwrapping v0.1.9 [d4d017d3] ExponentialUtilities v1.25.0 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To see why use status --outdated -m And finally, my version info julia> versioninfo() Julia Version 1.9.0 Commit 8e63055292 (2023-05-07 11:25 UTC) Platform Info: OS: Windows (x86_64-w64-mingw32) CPU: 8 × AMD Ryzen 5 3500U with Radeon Vega Mobile Gfx WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-14.0.6 (ORCJIT, znver1) Threads: 1 on 8 virtual cores Environment: JULIA_PKG_SERVER = https://mirrors.nju.edu.cn/julia — Reply to this email directly, view it on GitHub <#358>, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAZQW3JYO65OWH4SDR42C3DYI2MSRAVCNFSM6AAAAABAPGCUNGVHI2DSMVQWIX3LMV43ASLTON2WKOZSGAZTIOBXGUZDKOI . You are receiving this because you are subscribed to this thread.Message ID: @.***>
Environments in Julia are super easy to manage. You can simply use the package manager Pkg to activate a (new) environment in a project folder:
Pkg.activate(".")
Then add the packages as usual only for that folder.
You can also activate global environments to use across folders with similar dependencies using the @ syntax:
@.***")
You can then switch to any of these environments later with the same activate command.
By default you only get one global environment with the name @v1.9 in Julia v1.9.
Feel free to close the issue and continue the discussion on our Zulip channel.
Em seg., 11 de dez. de 2023 06:54, crobro254 @.***> escreveu:
Thanks for reply, I've yet to know how to configure an environment yet, but after removing some package then updating the GeoStats to 0.48.2, I'd resolved it, the problem could very possibly caused by DifferentiableStateSpace package, which not compatible with new versions of some package. It's up to me then to get familiar with environment control.
Can you please try to install the project in a fresh environment? Try to follow Julia's best practices and avoid installing packages in your global environment along with every other package. Dozens of packages installed on the same environment will likely require different versions of dependencies, in this case TableTransforms.jl is fixed at an old version. Em seg., 11 de dez. de 2023 02:44, crobro254 @.
> escreveu: … <#m-1304389337926747103> I'm new to Julia, maybe it's wrong with my environment, but using hints from REPL or Pkg I can't find a solution, nor did info on this error found by google search or issue search myself, so I raised this issue. julia> using GeoStats [ Info: Precompiling GeoStats [dcc97b0b-8ce5-5539-9008-bb190f959ef6] WARNING: could not import TableTransforms.ColSpec into GeoStatsTransforms WARNING: could not import TableTransforms.Col into GeoStatsTransforms WARNING: could not import TableTransforms.AllSpec into GeoStatsTransforms WARNING: could not import TableTransforms.NoneSpec into GeoStatsTransforms WARNING: could not import TableTransforms.colspec into GeoStatsTransforms WARNING: could not import TableTransforms.choose into GeoStatsTransforms ERROR: LoadError: UndefVarError: ColSpec not defined Stacktrace: [1] top-level scope @ C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\uniquecoords.jl:5 [2] include(mod::Module, _path::String) @ Base .\Base.jl:457 [3] include(x::String) @ GeoStatsTransforms C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:5 [4] top-level scope @ C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:29 [5] include @ .\Base.jl:457 [inlined] [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base .\loading.jl:2010 [7] top-level scope @ stdin:2 in expression starting at C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\uniquecoords.jl:5 in expression starting at C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:5 in expression starting at stdin:2 ERROR: LoadError: Failed to precompile GeoStatsTransforms [725d9659-360f-4996-9c94-5f19c7e4a8a6] to "C:\Users\PV.julia\compiled\v1.9\GeoStatsTransforms\jl_19D2.tmp". Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:2260 [3] compilecache @ .\loading.jl:2127 [inlined] [4] _require(pkg::Base.PkgId, env::String) @ Base .\loading.jl:1770 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base .\loading.jl:1625 [6] macro expansion @ .\loading.jl:1613 [inlined] [7] macro expansion @ .\lock.jl:267 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1576 [9] include @ .\Base.jl:457 [inlined] [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base .\loading.jl:2010 [11] top-level scope @ stdin:2 in expression starting at C:\Users\PV.julia\packages\GeoStats\BQ7dR\src\GeoStats.jl:5 in expression starting at stdin:2 ERROR: Failed to precompile GeoStats [dcc97b0b-8ce5-5539-9008-bb190f959ef6] to "C:\Users\PV.julia\compiled\v1.9\GeoStats\jl_FE9D.tmp". Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:2260 [3] compilecache @ .\loading.jl:2127 [inlined] [4] _require(pkg::Base.PkgId, env::String) @ Base .\loading.jl:1770 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base .\loading.jl:1625 [6] macro expansion @ .\loading.jl:1613 [inlined] [7] macro expansion @ .\lock.jl:267 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1576 My packages versions are: @.) pkg> status -m Status C:\Users\PV.julia\environments\v1.9\Manifest.toml [47edcb42] ADTypes v0.2.5 ⌅ [c3fe647b] AbstractAlgebra v0.33.0 [621f4979] AbstractFFTs v1.5.0 ⌅ [80f14c24] AbstractMCMC v4.4.2 ⌅ [7a57a42e] AbstractPPL v0.6.2 [1520ce14] AbstractTrees v0.4.4 [79e6a3ab] Adapt v3.7.2 ⌅ [0bf59076] AdvancedHMC v0.5.5 ⌅ [5b7e9947] AdvancedMH v0.7.4 ⌅ [576499cb] AdvancedPS v0.4.3 [b5ca4192] AdvancedVI v0.2.4 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To see why use status --outdated -m And finally, my version info julia> versioninfo() Julia Version 1.9.0 Commit 8e63055292 (2023-05-07 11:25 UTC) Platform Info: OS: Windows (x86_64-w64-mingw32) CPU: 8 × AMD Ryzen 5 3500U with Radeon Vega Mobile Gfx WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-14.0.6 (ORCJIT, znver1) Threads: 1 on 8 virtual cores Environment: JULIA_PKG_SERVER = https://mirrors.nju.edu.cn/julia — Reply to this email directly, view it on GitHub <#358 https://github.com/JuliaEarth/GeoStats.jl/issues/358>, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAZQW3JYO65OWH4SDR42C3DYI2MSRAVCNFSM6AAAAABAPGCUNGVHI2DSMVQWIX3LMV43ASLTON2WKOZSGAZTIOBXGUZDKOI . You are receiving this because you are subscribed to this thread.Message ID: @.***>
— Reply to this email directly, view it on GitHub https://github.com/JuliaEarth/GeoStats.jl/issues/358#issuecomment-1849704123, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAZQW3MWVTRN3Z7SJN4UZ5TYI3J4BAVCNFSM6AAAAABAPGCUNGVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQNBZG4YDIMJSGM . You are receiving this because you commented.Message ID: @.***>
I'm new to Julia, maybe it's wrong with my environment, but using hints from REPL or Pkg I can't find a solution, nor did info on this error found by google search or issue search myself, so I raised this issue.
julia> using GeoStats [ Info: Precompiling GeoStats [dcc97b0b-8ce5-5539-9008-bb190f959ef6] WARNING: could not import TableTransforms.ColSpec into GeoStatsTransforms WARNING: could not import TableTransforms.Col into GeoStatsTransforms WARNING: could not import TableTransforms.AllSpec into GeoStatsTransforms WARNING: could not import TableTransforms.NoneSpec into GeoStatsTransforms WARNING: could not import TableTransforms.colspec into GeoStatsTransforms WARNING: could not import TableTransforms.choose into GeoStatsTransforms ERROR: LoadError: UndefVarError:
ColSpec
not defined Stacktrace: [1] top-level scope @ C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\uniquecoords.jl:5 [2] include(mod::Module, _path::String) @ Base .\Base.jl:457 [3] include(x::String) @ GeoStatsTransforms C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:5 [4] top-level scope @ C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:29 [5] include @ .\Base.jl:457 [inlined] [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base .\loading.jl:2010 [7] top-level scope @ stdin:2 in expression starting at C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\uniquecoords.jl:5 in expression starting at C:\Users\PV.julia\packages\GeoStatsTransforms\XBj8P\src\GeoStatsTransforms.jl:5 in expression starting at stdin:2 ERROR: LoadError: Failed to precompile GeoStatsTransforms [725d9659-360f-4996-9c94-5f19c7e4a8a6] to "C:\Users\PV\.julia\compiled\v1.9\GeoStatsTransforms\jl_19D2.tmp". Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:2260 [3] compilecache @ .\loading.jl:2127 [inlined] [4] _require(pkg::Base.PkgId, env::String) @ Base .\loading.jl:1770 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base .\loading.jl:1625 [6] macro expansion @ .\loading.jl:1613 [inlined] [7] macro expansion @ .\lock.jl:267 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1576 [9] include @ .\Base.jl:457 [inlined] [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base .\loading.jl:2010 [11] top-level scope @ stdin:2 in expression starting at C:\Users\PV.julia\packages\GeoStats\BQ7dR\src\GeoStats.jl:5 in expression starting at stdin:2 ERROR: Failed to precompile GeoStats [dcc97b0b-8ce5-5539-9008-bb190f959ef6] to "C:\Users\PV\.julia\compiled\v1.9\GeoStats\jl_FE9D.tmp". Stacktrace: [1] error(s::String) @ Base .\error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base .\loading.jl:2260 [3] compilecache @ .\loading.jl:2127 [inlined] [4] _require(pkg::Base.PkgId, env::String) @ Base .\loading.jl:1770 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base .\loading.jl:1625 [6] macro expansion @ .\loading.jl:1613 [inlined] [7] macro expansion @ .\lock.jl:267 [inlined] [8] require(into::Module, mod::Symbol) @ Base .\loading.jl:1576My packages versions are: (@v1.9) pkg> status -m Status C:\Users\PV.julia\environments\v1.9\Manifest.toml [47edcb42] ADTypes v0.2.5 ⌅ [c3fe647b] AbstractAlgebra v0.33.0 [621f4979] AbstractFFTs v1.5.0 ⌅ [80f14c24] AbstractMCMC v4.4.2 ⌅ [7a57a42e] AbstractPPL v0.6.2 [1520ce14] AbstractTrees v0.4.4 [79e6a3ab] Adapt v3.7.2 ⌅ [0bf59076] AdvancedHMC v0.5.5 ⌅ [5b7e9947] AdvancedMH v0.7.4 ⌅ [576499cb] AdvancedPS v0.4.3 [b5ca4192] AdvancedVI v0.2.4 [dce04be8] ArgCheck v2.3.0 ⌅ [ec485272] ArnoldiMethod v0.1.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.6.1 [30b0a656] ArrayInterfaceCore v0.1.29 ⌃ [4c555306] ArrayLayouts v0.8.18 [a9b6321e] Atomix v0.1.0 [13072b0f] AxisAlgorithms v1.0.1 [39de3d68] AxisArrays v0.4.7 ⌅ [aae01518] BandedMatrices v0.17.18 [198e06fe] BangBang v0.3.39 [9718e550] Baselet v0.1.1 [6e4b80f9] BenchmarkTools v1.4.0 [0e736298] Bessels v0.2.8 [e2ed5e7c] Bijections v0.1.6 [76274a88] Bijectors v0.13.8 [d1d4a3ce] BitFlags v0.1.8 [62783981] BitTwiddlingConvenienceFunctions v0.1.5 ⌅ [764a87c0] BoundaryValueDiffEq v2.11.0 ⌅ [fa961155] CEnum v0.4.2 [2a0fbf3d] CPUSummary v0.2.4 [336ed68f] CSV v0.10.11 [49dc2e85] Calculus v0.5.1 [aafaddc9] CatIndices v0.2.2 [324d7699] CategoricalArrays v0.10.8 [8be319e6] Chain v0.5.0 [082447d4] ChainRules v1.58.0 [d360d2e6] ChainRulesCore v1.18.0 [9e997f8a] ChangesOfVariables v0.1.8 [7a955b69] CircularArrays v1.3.3 [fb6a15b2] CloseOpenIntervals v0.1.12 [aaaa29a8] Clustering 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Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.9.0 [de0858da] Printf [9abbd945] Profile [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays [10745b16] Statistics v1.9.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.0.2+0 [deac9b47] LibCURL_jll v7.84.0+0 [29816b5a] LibSSH2_jll v1.10.2+0 [c8ffd9c3] MbedTLS_jll v2.28.2+0 [14a3606d] MozillaCACerts_jll v2022.10.11 [4536629a] OpenBLAS_jll v0.3.21+4 [05823500] OpenLibm_jll v0.8.1+0 [efcefdf7] PCRE2_jll v10.42.0+0 [bea87d4a] SuiteSparse_jll v5.10.1+6 [83775a58] Zlib_jll v1.2.13+0 [8e850b90] libblastrampoline_jll v5.7.0+0 [8e850ede] nghttp2_jll v1.48.0+0 [3f19e933] p7zip_jll v17.4.0+0 Info Packages marked with ⌃ and ⌅ have new versions available, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use status --outdated -m
And finally, my version info julia> versioninfo() Julia Version 1.9.0 Commit 8e63055292 (2023-05-07 11:25 UTC) Platform Info: OS: Windows (x86_64-w64-mingw32) CPU: 8 × AMD Ryzen 5 3500U with Radeon Vega Mobile Gfx WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-14.0.6 (ORCJIT, znver1) Threads: 1 on 8 virtual cores Environment: JULIA_PKG_SERVER = https://mirrors.nju.edu.cn/julia