Open ericphanson opened 1 year ago
Problem 1:
In [25]: analyze("Mads"; version= v"0.9.1") ┌ Debug: Downloading code via github api └ @ PackageAnalyzer ~/.julia/packages/PackageAnalyzer/GHakA/src/obtain_code.jl:106 ┌ Debug: Must be download corruption; tree hash of download does not match expected │ get_tree_hash(dest) = "8b5971b5b9b32a2f45cacda47a0e5fd4849981d9" │ tree_hash = "488a8dfcddf4e1c0fef21a59f62e7e52b32f0888" └ @ PackageAnalyzer ~/.julia/packages/PackageAnalyzer/GHakA/src/obtain_code.jl:77 Out[25]: PackageV1 Mads: * repo: https://github.com/madsjulia/Mads.jl.git * uuid: d6bdc55b-bd94-5012-933c-1f73fc2ee992 * version: 0.9.1 * is reachable: false
Problem 2: if I manually clone,
❯ git clone https://github.com/madsjulia/Mads.jl.git ❯ cd Mads.jl ❯ git log --pretty=raw | grep -B 1 488a8dfcddf4e1c0fef21a59f62e7e52b32f0888 # tree hash from error above commit 191bee6213169df94c4d20dfd3c65907ac8e4833 tree 488a8dfcddf4e1c0fef21a59f62e7e52b32f0888 ❯ git reset --hard 191bee6213169df94c4d20dfd3c65907ac8e4833
then start Julia and analyze:
In [4]: using PackageAnalyzer In [5]: analyze(".") ERROR: SystemError: opening file "./examples/model_analysis/models/internal-polynomial.jl": No such file or directory Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:176 [2] #systemerror#82 @ ./error.jl:175 [inlined] [3] systemerror @ ./error.jl:175 [inlined] [4] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing) @ Base ./iostream.jl:293 [5] open @ ./iostream.jl:275 [inlined] [6] open(f::Base.var"#418#419"{String}, args::String; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base ./io.jl:393 [7] open @ ./io.jl:392 [inlined] [8] read @ ./io.jl:473 [inlined] [9] parse_green_node(file_path::String) @ PackageAnalyzer ~/.julia/packages/PackageAnalyzer/GHakA/src/count_loc.jl:102 [10] count_julia_lines_of_code(dir::String) @ PackageAnalyzer ~/.julia/packages/PackageAnalyzer/GHakA/src/count_loc.jl:146 [11] count_lines_of_code(dir::String) @ PackageAnalyzer ~/.julia/packages/PackageAnalyzer/GHakA/src/count_loc.jl:16 [12] analyze_code(dir::String; repo::String, reachable::Bool, subdir::String, auth::GitHub.AnonymousAuth, sleep::Int64, only_subdir::Bool, version::Nothing) @ PackageAnalyzer ~/.julia/packages/PackageAnalyzer/GHakA/src/analyze.jl:263 [13] analyze_code @ ~/.julia/packages/PackageAnalyzer/GHakA/src/analyze.jl:221 [inlined] [14] #analyze#41 @ ~/.julia/packages/PackageAnalyzer/GHakA/src/analyze.jl:185 [inlined] [15] analyze @ ~/.julia/packages/PackageAnalyzer/GHakA/src/analyze.jl:177 [inlined] [16] analyze(name_or_dir_or_url::String; registries::Vector{RegistryInstances.RegistryInstance}, auth::GitHub.AnonymousAuth, sleep::Int64, version::Nothing, root::String, subdir::String) @ PackageAnalyzer ~/.julia/packages/PackageAnalyzer/GHakA/src/analyze.jl:76 [17] analyze(name_or_dir_or_url::String) @ PackageAnalyzer ~/.julia/packages/PackageAnalyzer/GHakA/src/analyze.jl:58 [18] top-level scope @ REPL[5]:1 [19] top-level scope @ ~/.julia/juliaup/julia-1.9.1+0.aarch64.apple.darwin14/share/julia/stdlib/v1.9/REPL/src/REPL.jl:1416
The file in question seems to be a symlink:
❯ ls -alh ./examples/model_analysis/models/ total 600 drwxr-xr-x 13 eph staff 416B Jul 6 02:24 . drwxr-xr-x 28 eph staff 896B Jul 6 02:24 .. -rw-r--r-- 1 eph staff 461B Jul 6 02:24 internal-exp-polynomial.jl -rw-r--r-- 1 eph staff 550B Jul 6 02:24 internal-exp-polynomial.mads -rw-r--r-- 1 eph staff 399B Jul 6 02:24 internal-linear.jl -rw-r--r-- 1 eph staff 435B Jul 6 02:24 internal-linear.mads -rw-r--r-- 1 eph staff 129K Jul 6 02:24 internal-polynomial-efast-385.png -rw-r--r-- 1 eph staff 52K Jul 6 02:24 internal-polynomial-w13a-model-100-spaghetti.png -rw-r--r-- 1 eph staff 87K Jul 6 02:24 internal-polynomial-w13a-svr-100-spaghetti.png lrwxr-xr-x 1 eph staff 54B Jul 6 02:24 internal-polynomial.jl -> ../../internal-polynomial-model/internal-polynomial.jl lrwxr-xr-x 1 eph staff 56B Jul 6 02:24 internal-polynomial.mads -> ../../internal-polynomial-model/internal-polynomial.mads -rw-r--r-- 1 eph staff 437B Jul 6 02:24 internal-polynomial3.jl -rw-r--r-- 1 eph staff 549B Jul 6 02:24 internal-polynomial3.mads
I reported also in #90, the problem isn't the symlink per se, but the fact it has a nonsense target: they dumped the content of the file as the target....
Problem 1:
Problem 2: if I manually clone,
then start Julia and analyze:
The file in question seems to be a symlink: