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CUDA programming in Julia.
https://juliagpu.org/cuda/
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Vectors in customary structs make julia stuck #1366

Closed mmikhasenko closed 2 years ago

mmikhasenko commented 2 years ago

Cannot obtain the result of the map operation (Julia is stuck) when the kernel needs to iterate over a Vector in a customary struct.

To reproduce

using CUDA
using StaticArrays

struct MyModel{V}
    components::V
end

function amplitude(model::MyModel, x)
    # 
    value = zero(x)
    for comp in model.components
        value += x;
    end
    return value
end

const model_bad = MyModel([1.1]) # stuck
const model_goo = MyModel(SVector((1.1,))) # works

xv = rand(Float32, 10000)
xv_cu = CuArray(xv)
# 
map(x->amplitude(model_goo, x), xv_cu) # works
Iv_cu = map(x->amplitude(model_bad, x), xv_cu) # stuck

interestingly, in vscode I can evaluate two lines

Iv_cu = map(x->amplitude(model_bad, x), xv_cu) # stuck
length(Iv_cu)

it gives the correct length of the output, but getting stuck when I try to materialize, copy to CPU with show.

Manifest.toml

``` # This file is machine-generated - editing it directly is not advised julia_version = "1.7.0" manifest_format = "2.0" [[deps.AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] git-tree-sha1 = "6f1d9bc1c08f9f4a8fa92e3ea3cb50153a1b40d4" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.1.0" [[deps.AbstractTrees]] git-tree-sha1 = "03e0550477d86222521d254b741d470ba17ea0b5" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.3.4" [[deps.Adapt]] deps = ["LinearAlgebra"] git-tree-sha1 = "af92965fb30777147966f58acb05da51c5616b5f" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" version = "3.3.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" version = "2.3.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "SparseArrays"] git-tree-sha1 = "e1ba79094cae97b688fb42d31cbbfd63a69706e4" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" version = "0.7.8" [[deps.ArraysOfArrays]] deps = ["Adapt", "Requires", "Statistics", "UnsafeArrays"] git-tree-sha1 = "c0df7ffc36dbabcf5ee97e5da8fee228e6254041" uuid = "65a8f2f4-9b39-5baf-92e2-a9cc46fdf018" version = "0.5.7" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" [[deps.BFloat16s]] deps = ["LinearAlgebra", "Printf", "Random", "Test"] git-tree-sha1 = "a598ecb0d717092b5539dbbe890c98bac842b072" uuid = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" version = "0.2.0" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "Future", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables", "ZygoteRules"] git-tree-sha1 = "d648adb5e01b77358511fb95ea2e4d384109fac9" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" version = "0.3.35" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.BenchmarkTools]] deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] git-tree-sha1 = "940001114a0147b6e4d10624276d56d531dd9b49" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" version = "1.2.2" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.8+0" [[deps.CEnum]] git-tree-sha1 = "215a9aa4a1f23fbd05b92769fdd62559488d70e9" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.4.1" [[deps.CUDA]] deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "TimerOutputs"] git-tree-sha1 = "38cb39477fab69e2c2d21360f53e511c73bee5d6" repo-rev = "master" repo-url = "https://github.com/JuliaGPU/CUDA.jl.git" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" version = "3.8.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.16.1+1" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] git-tree-sha1 = "f9982ef575e19b0e5c7a98c6e75ee496c0f73a93" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" version = "1.12.0" [[deps.ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] git-tree-sha1 = "bf98fa45a0a4cee295de98d4c1462be26345b9a1" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" version = "0.1.2" [[deps.CodecLz4]] deps = ["Lz4_jll", "TranscodingStreams"] git-tree-sha1 = "59fe0cb37784288d6b9f1baebddbf75457395d40" uuid = "5ba52731-8f18-5e0d-9241-30f10d1ec561" version = "0.4.0" [[deps.CodecXz]] deps = ["Libdl", "TranscodingStreams", "XZ_jll"] git-tree-sha1 = "82c4c000edf64b6bda6766377e69a1028f3549ee" uuid = "ba30903b-d9e8-5048-a5ec-d1f5b0d4b47b" version = "0.7.0" [[deps.CodecZstd]] deps = ["CEnum", "TranscodingStreams", "Zstd_jll"] git-tree-sha1 = "849470b337d0fa8449c21061de922386f32949d9" uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2" version = "0.7.2" [[deps.ColorSchemes]] deps = ["ColorTypes", "Colors", "FixedPointNumbers", "Random"] git-tree-sha1 = "6b6f04f93710c71550ec7e16b650c1b9a612d0b6" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" version = "3.16.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "024fe24d83e4a5bf5fc80501a314ce0d1aa35597" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.11.0" [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] git-tree-sha1 = "417b0ed7b8b838aa6ca0a87aadf1bb9eb111ce40" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" version = "0.12.8" [[deps.Compat]] deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"] git-tree-sha1 = "44c37b4636bc54afac5c574d2d02b625349d6582" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" version = "3.41.0" [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" [[deps.CompositionsBase]] git-tree-sha1 = "455419f7e328a1a2493cabc6428d79e951349769" uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" version = "0.1.1" [[deps.ConstructionBase]] deps = ["LinearAlgebra"] git-tree-sha1 = "f74e9d5388b8620b4cee35d4c5a618dd4dc547f4" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" version = "1.3.0" [[deps.Contour]] deps = ["StaticArrays"] git-tree-sha1 = "9f02045d934dc030edad45944ea80dbd1f0ebea7" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.5.7" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] git-tree-sha1 = "cc70b17275652eb47bc9e5f81635981f13cea5c8" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.9.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] git-tree-sha1 = "3daef5523dd2e769dad2365274f760ff5f282c7d" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" version = "0.18.11" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" version = "0.1.2" [[deps.DelimitedFiles]] deps = ["Mmap"] uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" [[deps.Dictionaries]] deps = ["Indexing", "Random"] git-tree-sha1 = "66bde31636301f4d217a161cabe42536fa754ec8" uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" version = "0.3.17" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.DocStringExtensions]] deps = ["LibGit2"] git-tree-sha1 = "b19534d1895d702889b219c382a6e18010797f0b" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.8.6" [[deps.Downloads]] deps = ["ArgTools", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" [[deps.EarCut_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "3f3a2501fa7236e9b911e0f7a588c657e822bb6d" uuid = "5ae413db-bbd1-5e63-b57d-d24a61df00f5" version = "2.2.3+0" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ae13fcbc7ab8f16b0856729b050ef0c446aa3492" uuid = 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= "b53b4c65-9356-5827-b1ea-8c7a1a84506f" version = "1.6.38+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" version = "1.3.7+1" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" version = "2021.5.5+0" [[deps.x265_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" version = "3.5.0+0" [[deps.xkbcommon_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] git-tree-sha1 = "ece2350174195bb31de1a63bea3a41ae1aa593b6" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" version = "0.9.1+5" ```

Expected behavior

Naively I expect it to work when Vector a type parameter so that CUDA.jl can switch it out with a GPU-compatible array object.

Version info

Details on Julia:

Julia Version 1.7.0
Commit 3bf9d17731 (2021-11-30 12:12 UTC)       
Platform Info:
  OS: Windows (x86_64-w64-mingw32)
  CPU: Intel(R) Core(TM) i7-10700 CPU @ 2.90GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-12.0.1 (ORCJIT, skylake)
Environment:
  JULIA_EDITOR = code
  JULIA_NUM_THREADS = 8```

Details on CUDA:

last check was on master

toolkit 11.6, artifact installation NVIDIA driver 496.76.0, for CUDA 11.5 CUDA driver 11.5

Libraries:

Toolchain:

1 device: 0: NVIDIA GeForce RTX 2060 SUPER (sm_75, 3.095 GiB / 8.000 GiB available)

maleadt commented 2 years ago 
const model_bad = MyModel([1.1])

You're embedding a CPU value in your GPU kernel. This crashes the GPU.

We cannot detect this; if it was a captured value, or an argument, we could detect it isn't bits. But in this case, the CPU value is embedded by pointer:

julia> @device_code_llvm map(x->amplitude(model_bad, x), xv_cu)
; ││││┌ @ REPL[4]:3 within `amplitude`
; │││││┌ @ Base.jl:42 within `getproperty`
        %25 = load atomic { i8*, i64, i16, i16, i32 }*, { i8*, i64, i16, i16, i32 }** inttoptr (i64 140019866467280 to { i8*, i64, i16, i16, i32 }**) unordered, align 16
maleadt commented 2 years ago

For a solution:

# 1. make sure the model contains a GPU array
const model = MyModel(CuArray([1.1]))

# 2. make sure CUDA.jl knows how to convert this object to a device representation
using Adapt
Adapt.adapt_structure(to, model::MyModel) = MyModel(adapt(to, model.components))

# 3. put it in a function so that we don't embed a pointer to the global model
function doit(model, xv)
    map(x->amplitude(model, x), xv)
end

doit(model, xv_cu)

Despite all this, the hang is interesting though. Let me look a little closer into this.

mmikhasenko commented 2 years ago

thanks a lot!

And why SVector() solves it? It also has CPU value in it

maleadt commented 2 years ago

SVector is an immutable, which can be stack-allocated, so your model struct can be inlined in the code instead of referred to by memory location.