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JuliaHomotopyContinuation / HomotopyContinuation.jl

A Julia package for solving systems of polynomials via homotopy continuation.
https://www.JuliaHomotopyContinuation.org
MIT License
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WARNING: could not import DoubleFloats.Double64 into HomotopyContinuation #485

Closed asgherali39 closed 2 years ago

asgherali39 commented 2 years ago

On ubuntu 20.04, Julia 1.6.2, I get the following error

WARNING: could not import DoubleFloats.Double64 into HomotopyContinuation ERROR: LoadError: LoadError: UndefVarError: Double64 not defined Stacktrace: [1] top-level scope @ ~/.julia/packages/HomotopyContinuation/EYtCe/src/newton.jl:67 [2] include(mod::Module, _path::String) @ Base ./Base.jl:386 [3] include(x::String) @ HomotopyContinuation ~/.julia/packages/HomotopyContinuation/EYtCe/src/HomotopyContinuation.jl:1 [4] top-level scope @ ~/.julia/packages/HomotopyContinuation/EYtCe/src/HomotopyContinuation.jl:44 [5] include @ ./Base.jl:386 [inlined] [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String) @ Base ./loading.jl:1235 [7] top-level scope @ none:1 [8] eval @ ./boot.jl:360 [inlined] [9] eval(x::Expr) @ Base.MainInclude ./client.jl:446 [10] top-level scope @ none:1 in expression starting at /home/asgher/.julia/packages/HomotopyContinuation/EYtCe/src/newton.jl:67 in expression starting at /home/asgher/.julia/packages/HomotopyContinuation/EYtCe/src/HomotopyContinuation.jl:1 ERROR: LoadError: Failed to precompile HomotopyContinuation [f213a82b-91d6-5c5d-acf7-10f1c761b327] to /home/asgher/.julia/compiled/v1.6/HomotopyContinuation/jl_QucYLm. Stacktrace: [1] error(s::String) @ Base ./error.jl:33 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY, ignore_loaded_modules::Bool) @ Base ./loading.jl:1385 [3] compilecache(pkg::Base.PkgId, path::String) @ Base ./loading.jl:1329 [4] _require(pkg::Base.PkgId) @ Base ./loading.jl:1043 [5] require(uuidkey::Base.PkgId) @ Base ./loading.jl:936 [6] require(into::Module, mod::Symbol) @ Base ./loading.jl:923 [7] eval @ ./boot.jl:360 [inlined] [8] include_string(mapexpr::typeof(REPL.softscope), mod::Module, code::String, filename::String) @ Base ./loading.jl:1116 [9] invokelatest(::Any, ::Any, ::Vararg{Any, N} where N; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}) @ Base ./essentials.jl:708 [10] invokelatest(::Any, ::Any, ::Vararg{Any, N} where N) @ Base ./essentials.jl:706 [11] inlineeval(m::Module, code::String, code_line::Int64, code_column::Int64, file::String; softscope::Bool) @ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.3.32/scripts/packages/VSCodeServer/src/eval.jl:201 [12] (::VSCodeServer.var"#58#62"{Bool, Bool, Module, String, Int64, Int64, String, VSCodeServer.ReplRunCodeRequestParams})() @ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.3.32/scripts/packages/VSCodeServer/src/eval.jl:153 [13] withpath(f::VSCodeServer.var"#58#62"{Bool, Bool, Module, String, Int64, Int64, String, VSCodeServer.ReplRunCodeRequestParams}, path::String) @ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.3.32/scripts/packages/VSCodeServer/src/repl.jl:185 [14] (::VSCodeServer.var"#57#61"{Bool, Bool, Bool, Module, String, Int64, Int64, String, VSCodeServer.ReplRunCodeRequestParams})() @ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.3.32/scripts/packages/VSCodeServer/src/eval.jl:151 [15] hideprompt(f::VSCodeServer.var"#57#61"{Bool, Bool, Bool, Module, String, Int64, Int64, String, VSCodeServer.ReplRunCodeRequestParams}) @ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.3.32/scripts/packages/VSCodeServer/src/repl.jl:36 [16] (::VSCodeServer.var"#56#60"{Bool, Bool, Bool, Module, String, Int64, Int64, String, VSCodeServer.ReplRunCodeRequestParams})() @ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.3.32/scripts/packages/VSCodeServer/src/eval.jl:122 [17] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:491 [18] with_logger @ ./logging.jl:603 [inlined] [19] (::VSCodeServer.var"#55#59"{VSCodeServer.ReplRunCodeRequestParams})() @ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.3.32/scripts/packages/VSCodeServer/src/eval.jl:191 [20] #invokelatest#2 @ ./essentials.jl:708 [inlined] [21] invokelatest(::Any) @ Base ./essentials.jl:706 [22] macro expansion @ ~/.vscode/extensions/julialang.language-julia-1.3.32/scripts/packages/VSCodeServer/src/eval.jl:34 [inlined] [23] (::VSCodeServer.var"#53#54")() @ VSCodeServer ./task.jl:411 in expression starting at /home/asgher/Desktop/KalabaProblem/ver10.jl:2

PBrdng commented 2 years ago

Hi, what version of the software are you using?

asgherali39 commented 2 years ago

On Julia 1.6.2 and visual studio code 1.60

saschatimme commented 2 years ago

Can you tell us the result of

using Pkg
Pkg.status(mode=PKGMODE_MANIFEST)
asgherali39 commented 2 years ago

HomotopyContinuation v1.0.2

I have run the mentioned command and got the following result 

Status `~/.julia/environments/v1.6/Manifest.toml`

[621f4979] AbstractFFTs v0.5.0 [537997a7] AbstractPlotting v0.9.10 [1520ce14] AbstractTrees v0.2.1 [22286c92] AccurateArithmetic v0.3.0 [79e6a3ab] Adapt v1.1.0 [0bf59076] AdvancedHMC v0.1.0 [7c4d4715] AmplNLWriter v0.7.2 [f5f396d3] ApproxBayes v0.3.2 [dce04be8] ArgCheck v1.1.0 [ec485272] ArnoldiMethod v0.1.0 [7d9fca2a] Arpack v0.5.3 [4fba245c] ArrayInterface v1.2.1 [4c555306] ArrayLayouts v0.1.5 [bf4720bc] AssetRegistry v0.1.0 [15f4f7f2] AutoHashEquals v0.2.0 [13072b0f] AxisAlgorithms v1.0.0 [39de3d68] AxisArrays v0.3.3 [aae01518] BandedMatrices v0.14.3 [6e4b80f9] BenchmarkTools v0.4.3 [76274a88] Bijectors v0.2.9 [9e28174c] BinDeps v0.8.10 [b99e7846] BinaryProvider v0.5.10 [ad839575] Blink v0.12.5 [764a87c0] BoundaryValueDiffEq v2.3.0 [fa961155] CEnum v0.4.1 [a076750e] CPLEX v0.7.7 [336ed68f] CSV v0.5.23 [159f3aea] Cairo v1.0.5 [49dc2e85] Calculus v0.5.1 [a603d957] CanonicalTraits v0.2.4 [aafaddc9] CatIndices v0.2.2 [324d7699] CategoricalArrays v0.5.2 [082447d4] ChainRules v0.6.5 [d360d2e6] ChainRulesCore v0.8.1 [aaaa29a8] Clustering v0.13.5 [593b3428] CmdStan v5.2.3 [523fee87] CodecBzip2 v0.7.2 [944b1d66] CodecZlib v0.6.0 [a2cac450] ColorBrewer v0.4.0 [3da002f7] ColorTypes v0.8.1 [c3611d14] ColorVectorSpace v0.8.7 [5ae59095] Colors v0.9.6 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.0 [bbf7d656] CommonSubexpressions v0.3.0 [34da2185] Compat v2.2.1 [a81c6b42] Compose v0.8.2 [ed09eef8] ComputationalResources v0.3.2 [8f4d0f93] Conda v1.5.2 [d38c429a] Contour v0.5.7 [f65535da] Convex v0.14.13 [150eb455] CoordinateTransformations v0.6.1 [7ad07ef1] CoupledFields v0.1.0 [a8cc5b0e] Crayons v4.0.4 [dc8bdbbb] CustomUnitRanges v1.0.2 [d58978e5] Dagger v0.8.0 [9a962f9c] DataAPI v1.7.0 [124859b0] DataDeps v0.7.7 [2445eb08] DataDrivenDiffEq v0.1.3 [a93c6f00] DataFrames v0.18.4 [864edb3b] DataStructures v0.17.20 [e2d170a0] DataValueInterfaces v1.0.0 [e7dc6d0d] DataValues v0.4.13 [7806a523] DecisionTree v0.10.10 [bcd4f6db] DelayDiffEq v5.18.0 [39dd38d3] Dierckx v0.4.2 [2b5f629d] DiffEqBase v6.4.2 [ebbdde9d] DiffEqBayes v2.1.1 [459566f4] DiffEqCallbacks v2.9.0 [01453d9d] DiffEqDiffTools v1.7.0 [5a0ffddc] DiffEqFinancial v2.4.0 [aae7a2af] DiffEqFlux v0.7.0 [c894b116] DiffEqJump v6.2.2 [77a26b50] DiffEqNoiseProcess v3.3.1 [1130ab10] DiffEqParamEstim v1.10.0 [055956cb] DiffEqPhysics v3.9.0 [41bf760c] DiffEqSensitivity v4.3.0 [ef61062a] DiffEqUncertainty v1.6.0 [163ba53b] DiffResults v0.0.4 [b552c78f] DiffRules v1.3.0 [0c46a032] DifferentialEquations v6.8.0 [c619ae07] DimensionalPlotRecipes v1.2.0 [b4f34e82] Distances v0.8.2 [31c24e10] Distributions v0.21.12 [ffbed154] DocStringExtensions v0.8.5 [e30172f5] Documenter v0.24.11 [497a8b3b] DoubleFloats v0.1.1 [bbc10e6e] DynamicHMC v2.1.0 [7c1d4256] DynamicPolynomials v0.3.20 [fdbdab4c] ElasticArrays v0.4.0 [d4d017d3] ExponentialUtilities v1.6.0 [e2ba6199] ExprTools v0.1.6 [c87230d0] FFMPEG v0.2.4 [4f61f5a4] FFTViews v0.3.1 [7a1cc6ca] FFTW v1.3.0 [442a2c76] FastGaussQuadrature v0.4.5 [5789e2e9] FileIO v1.5.1 [48062228] FilePathsBase v0.7.0 [1a297f60] FillArrays v0.8.14 [53c48c17] FixedPointNumbers v0.6.1 [3dd14ad9] FixedPolynomials v0.4.0 [587475ba] Flux v0.8.3 [59287772] Formatting v0.4.2 [f6369f11] ForwardDiff v0.10.19 [b38be410] FreeType v2.1.1 [663a7486] FreeTypeAbstraction v0.4.2 [069b7b12] FunctionWrappers v1.1.2 [de31a74c] FunctionalCollections v0.5.0 [f7f18e0c] GLFW v3.4.1 [38e38edf] GLM v1.4.2 [e9467ef8] GLMakie v0.0.8 [60bf3e95] GLPK v0.13.0 [3c7084bd] GLPKMathProgInterface v0.5.0 [28b8d3ca] GR v0.44.0 [92fee26a] GZip v0.5.1 [c91e804a] Gadfly v1.2.1 [6b9d7cbe] GeneralizedGenerated v0.2.8 [01680d73] GenericSVD v0.2.2 [4d00f742] GeometryTypes v0.7.10 [c27321d9] Glob v1.3.0 [a2bd30eb] Graphics v1.1.0 [42e2da0e] Grisu v1.0.2 [19dc6840] HCubature v1.5.0 [cd3eb016] HTTP v0.8.19 [a1b4810d] Hexagons v0.2.0 [9fb69e20] Hiccup v0.2.2 [d9be37ee] Homebrew v0.7.1 [f213a82b] HomotopyContinuation v1.0.2 [7073ff75] IJulia v1.23.2 [7869d1d1] IRTools v0.4.3 [bbac6d45] IdentityRanges v0.3.1 [2803e5a7] ImageAxes v0.6.9 [a09fc81d] ImageCore v0.8.22 [6a3955dd] ImageFiltering v0.6.21 [6218d12a] ImageMagick v1.2.1 [02fcd773] ImageTransformations v0.8.13 [6deec6e2] IndexedTables v0.12.6 [9b13fd28] IndirectArrays v0.5.1 [d25df0c9] Inflate v0.1.2 [83e8ac13] IniFile v0.5.0 [505f98c9] InplaceOps v0.3.0 [a98d9a8b] Interpolations v0.12.10 [8197267c] IntervalSets v0.3.2 [d8418881] Intervals v1.5.0 [41ab1584] InvertedIndices v1.0.0 [b6b21f68] Ipopt v0.7.0 [c8e1da08] IterTools v1.3.0 [42fd0dbc] IterativeSolvers v0.8.5 [82899510] IteratorInterfaceExtensions v1.0.0 [d32f81f0] JFVM v1.0.4 https://github.com/simulkade/JFVM.jl#master [033835bb] JLD2 v0.1.14 [692b3bcd] JLLWrappers v1.3.0 [0aed6789] JPhreeqc v0.1.0 https://github.com/simulkade/JPhreeqc.jl#master [97c1335a] JSExpr v0.5.3 [682c06a0] JSON v0.21.1 [7d188eb4] JSONSchema v0.3.3 [4076af6c] JuMP v0.18.6 [a93385a2] JuliaDB v0.13.0 [b14d175d] JuliaVariables v0.2.4 [e5e0dc1b] Juno v0.7.2 [5ab0869b] KernelDensity v0.5.1 [2d691ee1] LIBLINEAR v0.6.0 [b1bec4e5] LIBSVM v0.7.0 [b964fa9f] LaTeXStrings v1.2.1 [2ee39098] LabelledArrays v1.1.0 [23fbe1c1] Latexify v0.13.5 [38d8eb38] Lathe v0.0.9 [50d2b5c4] Lazy v0.15.1 [5078a376] LazyArrays v0.1.0 [7f8f8fb0] LearnBase v0.2.2 [6f1fad26] Libtask v0.2.9 [093fc24a] LightGraphs v1.3.5 [d3d80556] LineSearches v7.1.1 [4345ca2d] Loess v0.5.3 [6fdf6af0] LogDensityProblems v0.9.1 [30fc2ffe] LossFunctions v0.5.1 [2fda8390] LsqFit v0.8.1 [72ce6e51] MCMCBenchmarks v0.5.2 [1671dc4f] MCMCChain v0.2.3 [c7f686f2] MCMCChains v0.3.14 [6e857e4b] MCMCDiagnostics v0.3.0 [f0e99cf1] MLBase v0.8.0 [eb30cadb] MLDatasets v0.4.0 [add582a8] MLJ v0.5.0 [a7f614a8] MLJBase v0.6.0 [d491faf4] MLJModels v0.5.0 [d8e11817] MLStyle v0.4.10 [1914dd2f] MacroTools v0.5.7 [5424a776] Mamba v0.12.2 [dbb5928d] MappedArrays v0.2.2 [b8f27783] MathOptInterface v0.9.22 [fdba3010] MathProgBase v0.7.8 [739be429] MbedTLS v1.0.3 [442fdcdd] Measures v0.3.1 [e89f7d12] Media v0.5.0 [f9f48841] MemPool v0.2.0 [7269a6da] MeshIO v0.3.2 [e1d29d7a] Missings v0.4.5 [291d046c] MixedSubdivisions v0.3.4 [78c3b35d] Mocking v0.7.2 [961ee093] ModelingToolkit v1.4.3 [66fc600b] ModernGL v1.1.2 [4886b29c] MonteCarloIntegration v0.0.1 [e94cdb99] MosaicViews v0.3.3 [46d2c3a1] MuladdMacro v0.2.2 [f9640e96] MultiScaleArrays v1.5.0 [102ac46a] MultivariatePolynomials v0.3.18 [ffc61752] Mustache v1.0.10 [d8a4904e] MutableArithmetics v0.2.20 [a975b10e] Mux v0.7.6 [290757bd] NLOptControl v0.3.0 https://github.com/JuliaMPC/NLOptControl.jl#master [d41bc354] NLSolversBase v7.5.0 [76087f3c] NLopt v0.6.3 [2774e3e8] NLsolve v4.5.1 [872c559c] NNlib v0.6.6 [77ba4419] NaNMath v0.3.5 [71a1bf82] NameResolution v0.1.5 [86f7a689] NamedArrays v0.9.4 [d9ec5142] NamedTupleTools v0.12.1 [b8a86587] NearestNeighbors v0.4.4 [4d1e1d77] Nullables v0.0.8 [47be7bcc] ORCA v0.5.0 [ab2f91bb] OSQP v0.6.1 [510215fc] Observables v0.2.3 [6fe1bfb0] OffsetArrays v1.3.1 [a15396b6] OnlineStats v1.4.0 [925886fa] OnlineStatsBase v1.2.7 [429524aa] Optim v0.19.7 [87e2bd06] OptimBase v2.0.2 [bac558e1] OrderedCollections v1.4.1 [1dea7af3] OrdinaryDiffEq v5.23.0 [90014a1f] PDMats v0.9.2 [19eb6ba3] Packing v0.3.0 [5432bcbf] PaddedViews v0.5.10 [65888b18] ParameterizedFunctions v4.2.1 [d96e819e] Parameters v0.10.3 [69de0a69] Parsers v0.3.12 [06bb1623] PenaltyFunctions v0.1.2 [fa939f87] Pidfile v1.2.0 [ccf2f8ad] PlotThemes v1.0.3 [995b91a9] PlotUtils v0.6.5 [58dd65bb] Plotly v0.3.0 [a03496cd] PlotlyBase v0.3.1 [f0f68f2c] PlotlyJS v0.13.1 [91a5bcdd] Plots v0.28.4 [e409e4f3] PoissonRandom v0.4.0 [f27b6e38] Polynomials v2.0.14 [2dfb63ee] PooledArrays v0.5.3 [85a6dd25] PositiveFactorizations v0.2.4 [21216c6a] Preferences v1.2.2 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v0.5.1 [92933f4c] ProgressMeter v0.9.0 [01f381cc] ProjectiveVectors v0.2.2 [3349acd9] ProtoBuf v0.8.0 [a725b495] ProximalOperators v0.10.3 [438e738f] PyCall v1.92.3 [d330b81b] PyPlot v2.9.0 [1fd47b50] QuadGK v2.4.1 [67601950] Quadrature v1.1.0 [e6cf234a] RandomNumbers v1.4.0 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.0 [3cdcf5f2] RecipesBase v0.7.0 [731186ca] RecursiveArrayTools v1.2.1 [f2c3362d] RecursiveFactorization v0.1.0 [189a3867] Reexport v0.2.0 [ae029012] Requires v0.5.2 [ae5879a3] ResettableStacks v1.1.1 [89212889] ReverseDiffSparse v0.8.6 [295af30f] Revise v1.0.3 [79098fc4] Rmath v0.5.1 [f2b01f46] Roots v0.8.4 [6038ab10] Rotations v1.0.2 [c946c3f1] SCS v0.7.0 [321657f4] ScientificTypes v0.2.3 [3646fa90] ScikitLearn v0.5.0 [6e75b9c4] ScikitLearnBase v0.5.0 [1277b4bf] ShiftedArrays v1.0.0 [992d4aef] Showoff v0.3.2 [73760f76] SignedDistanceFields v0.4.0 [699a6c99] SimpleTraits v0.9.4 [b85f4697] SoftGlobalScope v1.1.0 [a2af1166] SortingAlgorithms v0.3.1 [47a9eef4] SparseDiffTools v0.10.3 [276daf66] SpecialFunctions v0.8.0 [cae243ae] StackViews v0.1.1 [682df890] Stan v5.0.2 [d0ee94f6] StanBase v1.0.0 [fb13fc95] StanDiagnose v1.0.0 [9713c8f3] StanDump v0.2.0 [fbd8da12] StanOptimize v1.0.0 [d49c3b98] StanRun v0.2.1 [c1514b29] StanSample v1.0.0 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and re-run the same code and it has thrown again the same error.

asgherali39 commented 2 years ago

Thank you for hearing me out. I have cloned the latest version of the HomotopyContinuation from GitHub and now the code works.

saschatimme commented 2 years ago

For some reason you get a reaaaally old version from HomotopyContinuation.