Closed simonbyrne closed 6 months ago
Does anyone know what's going up with nightly here?
plain: Error During Test at /home/runner/work/HDF5.jl/HDF5.jl/test/plain.jl:24
Got exception outside of a @test
conversion to pointer not defined for Vector{HDF5.API.hvl_t}
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] unsafe_convert(::Type{Ptr{HDF5.API.hvl_t}}, a::Vector{HDF5.API.hvl_t})
@ Base ./pointer.jl:67
[3] unsafe_convert(::Type{Ptr{Nothing}}, a::Vector{HDF5.API.hvl_t})
@ Base ./pointer.jl:66
[4] h5d_write(dataset_id::HDF5.Dataset, mem_type_id::HDF5.Datatype, mem_space_id::Int64, file_space_id::Int64, xfer_plist_id::HDF5.DatasetTransferProperties, buf::HDF5.VLen{HDF5.ASCIIChar})
@ HDF5.API ~/work/HDF5.jl/HDF5.jl/src/api/functions.jl:908
[5] write_dataset(dset::HDF5.Dataset, memtype::HDF5.Datatype, x::HDF5.VLen{HDF5.ASCIIChar}, xfer::HDF5.DatasetTransferProperties)
@ HDF5 ~/work/HDF5.jl/HDF5.jl/src/datasets.jl:488
[6] write_dataset(parent::HDF5.File, name::String, data::HDF5.VLen{HDF5.ASCIIChar}; pv::@Kwargs{})
@ HDF5 ~/work/HDF5.jl/HDF5.jl/src/datasets.jl:320
[7] write_dataset(parent::HDF5.File, name::String, data::HDF5.VLen{HDF5.ASCIIChar})
@ HDF5 ~/work/HDF5.jl/HDF5.jl/src/datasets.jl:315
[8] macro expansion
@ ~/work/HDF5.jl/HDF5.jl/test/plain.jl:88 [inlined]
[9] macro expansion
@ /opt/hostedtoolcache/julia/nightly/x64/share/julia/stdlib/v1.11/Test/src/Test.jl:1598 [inlined]
[10] top-level scope
@ ~/work/HDF5.jl/HDF5.jl/test/plain.jl:27
[11] include(fname::String)
@ Base.MainInclude ./client.jl:497
[12] macro expansion
@ ~/work/HDF5.jl/HDF5.jl/test/runtests.jl:36 [inlined]
[13] macro expansion
@ /opt/hostedtoolcache/julia/nightly/x64/share/julia/stdlib/v1.11/Test/src/Test.jl:1598 [inlined]
[14] top-level scope
@ ~/work/HDF5.jl/HDF5.jl/test/runtests.jl:35
[15] include(fname::String)
@ Base.MainInclude ./client.jl:497
[16] top-level scope
@ none:6
[17] eval
@ Core ./boot.jl:418 [inlined]
[18] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:291
[19] _start()
@ Base ./client.jl:568
abstract arrays: Error During Test at /home/runner/work/HDF5.jl/HDF5.jl/test/plain.jl:674
Got exception outside of a @test
conversion to pointer not defined for Base.ReinterpretArray{UInt8, 1, Bool, Vector{Bool}, false}
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] unsafe_convert(::Type{Ptr{UInt8}}, a::Base.ReinterpretArray{UInt8, 1, Bool, Vector{Bool}, false})
@ Base ./pointer.jl:67
[3] unsafe_convert(::Type{Ptr{Nothing}}, a::Base.ReinterpretArray{UInt8, 1, Bool, Vector{Bool}, false})
@ Base ./pointer.jl:66
[4] h5d_write(dataset_id::HDF5.Dataset, mem_type_id::HDF5.Datatype, mem_space_id::Int64, file_space_id::Int64, xfer_plist_id::HDF5.DatasetTransferProperties, buf::Base.ReinterpretArray{UInt8, 1, Bool, Vector{Bool}, false})
@ HDF5.API ~/work/HDF5.jl/HDF5.jl/src/api/functions.jl:908
[5] write_dataset(dataset::HDF5.Dataset, memtype::HDF5.Datatype, buf::Base.ReinterpretArray{UInt8, 1, Bool, Vector{Bool}, false}, xfer::HDF5.DatasetTransferProperties)
@ HDF5 ~/work/HDF5.jl/HDF5.jl/src/datasets.jl:523
[6] write_dataset(dataset::HDF5.Dataset, memtype::HDF5.Datatype, buf::Base.ReinterpretArray{UInt8, 1, Bool, Vector{Bool}, false})
@ HDF5 ~/work/HDF5.jl/HDF5.jl/src/datasets.jl:521
[7] write_dataset(parent::HDF5.File, name::String, data::Base.ReinterpretArray{UInt8, 1, Bool, Vector{Bool}, false}; pv::@Kwargs{})
@ HDF5 ~/work/HDF5.jl/HDF5.jl/src/datasets.jl:320
[8] write_dataset(parent::HDF5.File, name::String, data::Base.ReinterpretArray{UInt8, 1, Bool, Vector{Bool}, false})
@ HDF5 ~/work/HDF5.jl/HDF5.jl/src/datasets.jl:315
[9] write(parent::HDF5.File, name::String, data::Base.ReinterpretArray{UInt8, 1, Bool, Vector{Bool}, false}; pv::@Kwargs{})
@ HDF5 ~/work/HDF5.jl/HDF5.jl/src/datasets.jl:342
[10] (::var"#37#40")(f::HDF5.File)
@ Main ~/work/HDF5.jl/HDF5.jl/test/plain.jl:681
[11] (::HDF5.var"#17#18"{HDF5.HDF5Context, @Kwargs{}, var"#37#40", HDF5.File})()
@ HDF5 ~/work/HDF5.jl/HDF5.jl/src/file.jl:101
[12] task_local_storage(body::HDF5.var"#17#18"{HDF5.HDF5Context, @Kwargs{}, var"#37#40", HDF5.File}, key::Symbol, val::HDF5.HDF5Context)
@ Base ./task.jl:299
[13] h5open(::var"#37#40", ::String, ::Vararg{String}; context::HDF5.HDF5Context, pv::@Kwargs{})
@ HDF5 ~/work/HDF5.jl/HDF5.jl/src/file.jl:96
[14] h5open(::Function, ::String, ::String)
@ HDF5 ~/work/HDF5.jl/HDF5.jl/src/file.jl:94
[15] macro expansion
@ ~/work/HDF5.jl/HDF5.jl/test/plain.jl:679 [inlined]
[16] macro expansion
@ /opt/hostedtoolcache/julia/nightly/x64/share/julia/stdlib/v1.11/Test/src/Test.jl:1598 [inlined]
[17] top-level scope
@ ~/work/HDF5.jl/HDF5.jl/test/plain.jl:677
[18] include(fname::String)
@ Base.MainInclude ./client.jl:497
[19] macro expansion
@ ~/work/HDF5.jl/HDF5.jl/test/runtests.jl:36 [inlined]
[20] macro expansion
@ /opt/hostedtoolcache/julia/nightly/x64/share/julia/stdlib/v1.11/Test/src/Test.jl:1598 [inlined]
[21] top-level scope
@ ~/work/HDF5.jl/HDF5.jl/test/runtests.jl:35
[22] include(fname::String)
@ Base.MainInclude ./client.jl:497
[23] top-level scope
@ none:6
[24] eval
@ Core ./boot.jl:418 [inlined]
[25] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:[291](https://github.com/JuliaIO/HDF5.jl/actions/runs/6724886980/job/18278119057?pr=1130#step:5:294)
[26] _start()
@ Base ./client.jl:568
can a new release be tagged with this fix? 🙏
bump :)
I think it might be easier to back port this to the 0.17 branch. I will work on that today.
I released HDF5.jl 0.17.2
Fixes #1129