Open emsal0 opened 3 years ago
Can you show the output of st -m
from the Pkg REPL?
I'm going to guess you're using JLD with HDF5 v0.13.6 and HDF5_jll v1.12.0. I may have debugged a way to fix the problem, though I still don't understand why it shows up with HDF5_jll v1.12 and not v1.10.
In the mean time, try forcing HDF5 to v0.13.7 which should downgrade HDF5_jll back to v1.10.5+7, and see if that helps.
Status `~/.julia/environments/v1.5/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[1520ce14] AbstractTrees v0.3.3
[79e6a3ab] Adapt v2.3.0
[ec485272] ArnoldiMethod v0.0.4
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+3
[4fba245c] ArrayInterface v2.13.7
[4c555306] ArrayLayouts v0.3.8
[56f22d72] Artifacts v1.3.0
[bf4720bc] AssetRegistry v0.1.0
[c52e3926] Atom v0.12.21
[13072b0f] AxisAlgorithms v1.0.0
[39de3d68] AxisArrays v0.4.3
[ab4f0b2a] BFloat16s v0.1.0
[6e4b80f9] BenchmarkTools v0.5.0
[b99e7846] BinaryProvider v0.5.10
[a134a8b2] BlackBoxOptim v0.5.0
[8e7c35d0] BlockArrays v0.12.11
[a74b3585] Blosc v0.7.0
[0b7ba130] Blosc_jll v1.14.3+1
[6e34b625] Bzip2_jll v1.0.6+5
[fa961155] CEnum v0.4.1
[a9c8d775] CPUTime v1.0.0
[00ebfdb7] CSTParser v2.5.0
[336ed68f] CSV v0.7.7
[052768ef] CUDA v2.3.0
[49dc2e85] Calculus v0.5.1
[aafaddc9] CatIndices v0.2.1
[324d7699] CategoricalArrays v0.8.3
[082447d4] ChainRules v0.7.33
[d360d2e6] ChainRulesCore v0.9.19
[cdddcdb0] ChainRulesTestUtils v0.5.3
[53a63b46] CodeTools v0.7.1
[da1fd8a2] CodeTracking v1.0.5
[523fee87] CodecBzip2 v0.7.2
[944b1d66] CodecZlib v0.7.0
[35d6a980] ColorSchemes v3.10.1
[3da002f7] ColorTypes v0.10.9
[c3611d14] ColorVectorSpace v0.8.7
[5ae59095] Colors v0.12.4
[a80b9123] CommonMark v0.6.4
[bbf7d656] CommonSubexpressions v0.3.0
[34da2185] Compat v3.23.0
[e66e0078] CompilerSupportLibraries_jll v0.3.4+0
[ed09eef8] ComputationalResources v0.3.2
[8f4d0f93] Conda v1.5.0
[88cd18e8] ConsoleProgressMonitor v0.1.2
[d38c429a] Contour v0.5.6
[f65535da] Convex v0.13.7
[150eb455] CoordinateTransformations v0.6.0
[adafc99b] CpuId v0.2.2
[a8cc5b0e] Crayons v4.0.4
[dc8bdbbb] CustomUnitRanges v1.0.0
[717857b8] DSP v0.6.9
[9a962f9c] DataAPI v1.4.0
[a93c6f00] DataFrames v0.21.7
[864edb3b] DataStructures v0.18.8
[e2d170a0] DataValueInterfaces v1.0.0
[2b5f629d] DiffEqBase v6.48.2
[459566f4] DiffEqCallbacks v2.14.1
[01453d9d] DiffEqDiffTools v1.7.0
[aae7a2af] DiffEqFlux v1.21.0
[c894b116] DiffEqJump v6.10.1
[77a26b50] DiffEqNoiseProcess v5.4.2
[41bf760c] DiffEqSensitivity v6.34.0
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.2
[b4f34e82] Distances v0.9.2
[31c24e10] Distributions v0.23.8
[ced4e74d] DistributionsAD v0.6.11
[33d173f1] DocSeeker v0.4.2
[ffbed154] DocStringExtensions v0.8.3
[e30172f5] Documenter v0.25.4
[5ae413db] EarCut_jll v2.1.5+1
[da5c29d0] EllipsisNotation v0.4.0
[d4d017d3] ExponentialUtilities v1.8.0
[e2ba6199] ExprTools v0.1.3
[8f5d6c58] EzXML v1.1.0
[c87230d0] FFMPEG v0.4.0
[b22a6f82] FFMPEG_jll v4.3.1+4
[4f61f5a4] FFTViews v0.3.1
[7a1cc6ca] FFTW v1.2.4
[f5851436] FFTW_jll v3.3.9+6
[9aa1b823] FastClosures v0.3.2
[5789e2e9] FileIO v1.4.3
[1a297f60] FillArrays v0.8.14
[6a86dc24] FiniteDiff v2.7.1
[26cc04aa] FiniteDifferences v0.11.3
[53c48c17] FixedPointNumbers v0.8.4
[08572546] FlameGraphs v0.2.4
[587475ba] Flux v0.11.2
[f6369f11] ForwardDiff v0.10.12
[d7e528f0] FreeType2_jll v2.10.1+5
[559328eb] FriBidi_jll v1.0.5+6
[069b7b12] FunctionWrappers v1.1.1
[de31a74c] FunctionalCollections v0.5.0
[d9f16b24] Functors v0.1.0
[fb4132e2] FuzzyCompletions v0.2.6
[0c68f7d7] GPUArrays v6.1.2
[61eb1bfa] GPUCompiler v0.8.3
[28b8d3ca] GR v0.52.0
[01680d73] GenericSVD v0.3.0
[5c1252a2] GeometryBasics v0.3.3
[4d00f742] GeometryTypes v0.8.3
[a2bd30eb] Graphics v1.0.2
[42e2da0e] Grisu v1.0.0
[f67ccb44] HDF5 v0.13.6
[0234f1f7] HDF5_jll v1.12.0+1
[cd3eb016] HTTP v0.8.19
[9fb69e20] Hiccup v0.2.2
[b5f81e59] IOCapture v0.1.1
[7869d1d1] IRTools v0.4.1
[bbac6d45] IdentityRanges v0.3.1
[2803e5a7] ImageAxes v0.6.7
[f332f351] ImageContrastAdjustment v0.3.6
[a09fc81d] ImageCore v0.8.16
[51556ac3] ImageDistances v0.2.9
[6a3955dd] ImageFiltering v0.6.16
[82e4d734] ImageIO v0.3.0
[6218d12a] ImageMagick v1.1.6
[c73af94c] ImageMagick_jll v6.9.10-12+3
[bc367c6b] ImageMetadata v0.9.4
[787d08f9] ImageMorphology v0.2.9
[2996bd0c] ImageQualityIndexes v0.1.4
[4e3cecfd] ImageShow v0.2.3
[02fcd773] ImageTransformations v0.8.6
[916415d5] Images v0.22.4
[9b13fd28] IndirectArrays v0.5.1
[d25df0c9] Inflate v0.1.2
[83e8ac13] IniFile v0.5.0
[1d5cc7b8] IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] Interpolations v0.12.10
[8197267c] IntervalSets v0.5.1
[d8418881] Intervals v1.5.0
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[42fd0dbc] IterativeSolvers v0.8.4
[82899510] IteratorInterfaceExtensions v1.0.0
[4138dd39] JLD v0.10.0
[692b3bcd] JLLWrappers v1.1.3
[682c06a0] JSON v0.21.1
[7d188eb4] JSONSchema v0.3.2
[aacddb02] JpegTurbo_jll v2.0.1+3
[98e50ef6] JuliaFormatter v0.7.6
[aa1ae85d] JuliaInterpreter v0.7.26
[e5e0dc1b] Juno v0.8.3
[c1c5ebd0] LAME_jll v3.100.0+3
[929cbde3] LLVM v3.4.0
[7c4cb9fa] LNR v0.2.1
[b964fa9f] LaTeXStrings v1.2.0
[2ee39098] LabelledArrays v1.3.0
[a5e1c1ea] LatinHypercubeSampling v1.7.3
[73f95e8e] LatticeRules v0.0.1
[50d2b5c4] Lazy v0.15.1
[1d6d02ad] LeftChildRightSiblingTrees v0.1.2
[deac9b47] LibCURL_jll v7.70.0+2
[29816b5a] LibSSH2_jll v1.9.0+3
[dd192d2f] LibVPX_jll v1.9.0+1
[94ce4f54] Libiconv_jll v1.16.0+7
[89763e89] Libtiff_jll v4.1.0+2
[093fc24a] LightGraphs v1.3.0
[9c8b4983] LightXML v0.9.0
[d3d80556] LineSearches v7.1.0
[e6f89c97] LoggingExtras v0.4.2
[bdcacae8] LoopVectorization v0.8.26
[5ced341a] Lz4_jll v1.9.2+2
[856f044c] MKL_jll v2020.2.254+0
[1914dd2f] MacroTools v0.5.6
[dbb5928d] MappedArrays v0.2.2
[b8f27783] MathOptInterface v0.9.18
[fdba3010] MathProgBase v0.7.8
[739be429] MbedTLS v1.0.3
[c8ffd9c3] MbedTLS_jll v2.16.8+1
[442fdcdd] Measures v0.3.1
[e89f7d12] Media v0.5.0
[e1d29d7a] Missings v0.4.4
[78c3b35d] Mocking v0.7.1
[e94cdb99] MosaicViews v0.2.4
[99f44e22] MsgPack v1.1.0
[46d2c3a1] MuladdMacro v0.2.2
[d8a4904e] MutableArithmetics v0.2.12
[d41bc354] NLSolversBase v7.5.0
[2774e3e8] NLsolve v4.4.1
[872c559c] NNlib v0.7.7
[77ba4419] NaNMath v0.3.5
[0f4fe800] OMJulia v0.1.0
[510215fc] Observables v0.3.2
[6fe1bfb0] OffsetArrays v1.4.0
[e7412a2a] Ogg_jll v1.3.4+2
[4536629a] OpenBLAS_jll v0.3.9+5
[458c3c95] OpenSSL_jll v1.1.1+6
[efe28fd5] OpenSpecFun_jll v0.5.3+4
[429524aa] Optim v0.22.0
[91d4177d] Opus_jll v1.3.1+3
[bac558e1] OrderedCollections v1.3.2
[1dea7af3] OrdinaryDiffEq v5.45.1
[90014a1f] PDMats v0.10.1
[f57f5aa1] PNGFiles v0.3.2
[5432bcbf] PaddedViews v0.5.7
[d96e819e] Parameters v0.12.1
[69de0a69] Parsers v1.0.12
[fa939f87] Pidfile v1.2.0
[ccf2f8ad] PlotThemes v2.0.0
[995b91a9] PlotUtils v1.0.7
[91a5bcdd] Plots v1.6.5
[c3e4b0f8] Pluto v0.12.11
[7f904dfe] PlutoUI v0.6.6
[e409e4f3] PoissonRandom v0.4.0
[f27b6e38] Polynomials v1.1.12
[2dfb63ee] PooledArrays v0.5.3
[85a6dd25] PositiveFactorizations v0.2.3
[33c8b6b6] ProgressLogging v0.1.3
[92933f4c] ProgressMeter v1.4.0
[438e738f] PyCall v1.92.1
[d330b81b] PyPlot v2.9.0
[1fd47b50] QuadGK v2.4.1
[8a4e6c94] QuasiMonteCarlo v0.2.1
[74087812] Random123 v1.2.0
[e6cf234a] RandomNumbers v1.4.0
[b3c3ace0] RangeArrays v0.3.2
[c84ed2f1] Ratios v0.4.0
[3cdcf5f2] RecipesBase v1.1.1
[01d81517] RecipesPipeline v0.1.13
[731186ca] RecursiveArrayTools v2.7.2
[f2c3362d] RecursiveFactorization v0.1.4
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.1.1
[ae5879a3] ResettableStacks v1.0.0
[37e2e3b7] ReverseDiff v1.4.4
[708f8203] Richardson v1.2.0
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[f2b01f46] Roots v1.0.5
[6038ab10] Rotations v1.0.1
[c946c3f1] SCS v0.7.0
[f4f2fc5b] SCS_jll v2.1.2+1
[21efa798] SIMDPirates v0.8.26
[476501e8] SLEEFPirates v0.5.5
[6c6a2e73] Scratch v1.0.3
[91c51154] SentinelArrays v1.2.16
[992d4aef] Showoff v0.3.2
[699a6c99] SimpleTraits v0.9.3
[ed01d8cd] Sobol v1.4.0
[a2af1166] SortingAlgorithms v0.3.1
[47a9eef4] SparseDiffTools v1.10.1
[d4ead438] SpatialIndexing v0.1.2
[276daf66] SpecialFunctions v0.10.3
[860ef19b] StableRNGs v1.0.0
[90137ffa] StaticArrays v0.12.5
[2913bbd2] StatsBase v0.33.1
[4c63d2b9] StatsFuns v0.9.6
[8188c328] Stheno v0.6.9
[789caeaf] StochasticDiffEq v6.26.0
[88034a9c] StringDistances v0.8.0
[09ab397b] StructArrays v0.4.4
[856f2bd8] StructTypes v1.1.0
[fd094767] Suppressor v0.2.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.2.1
[5d786b92] TerminalLoggers v0.1.2
[5e47fb64] TestImages v1.2.3
[06e1c1a7] TiledIteration v0.2.5
[f269a46b] TimeZones v1.5.1
[a759f4b9] TimerOutputs v0.5.7
[0796e94c] Tokenize v0.5.8
[9f7883ad] Tracker v0.2.12
[3bb67fe8] TranscodingStreams v0.9.5
[a2a6695c] TreeViews v0.3.0
[30578b45] URIParser v0.4.1
[3a884ed6] UnPack v1.0.2
[3d5dd08c] VectorizationBase v0.12.33
[81def892] VersionParsing v1.2.0
[19fa3120] VertexSafeGraphs v0.1.2
[8149f6b0] WAV v1.0.3
[29a6e085] Wavelets v0.9.2
[0f1e0344] WebIO v0.8.15
[104b5d7c] WebSockets v1.5.2
[cc8bc4a8] Widgets v0.6.2
[efce3f68] WoodburyMatrices v0.5.3
[02c8fc9c] XML2_jll v2.9.10+3
[c2297ded] ZMQ v1.2.1
[8f1865be] ZeroMQ_jll v4.3.2+5
[a5390f91] ZipFile v0.9.3
[83775a58] Zlib_jll v1.2.11+18
[3161d3a3] Zstd_jll v1.4.5+2
[e88e6eb3] Zygote v0.5.13
[700de1a5] ZygoteRules v0.2.0
[0ac62f75] libass_jll v0.14.0+4
[f638f0a6] libfdk_aac_jll v0.1.6+4
[b53b4c65] libpng_jll v1.6.37+6
[f27f6e37] libvorbis_jll v1.3.6+6
[8e850ede] nghttp2_jll v1.40.0+2
[1270edf5] x264_jll v2020.7.14+2
[dfaa095f] x265_jll v3.0.0+3
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[7b1f6079] FileWatching
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[9abbd945] Profile
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Please retry with the newly tagged JLD v0.11. I expect that will have fixed your problem.
I am seeing the same issue. Whenever JLD loads a file, the type that it loads is not the same type that it's saved with.
Can you give a minimal test case to demonstrate the error? In particular, have you loaded the package which defines the type prior to loading the file? For instance, I can get a warning and a unique type by not loading the SparseArrays
package before loading a SparseMatrixCSC
which was saved in a prior session.
Generate data file
$ julia1.6 --quiet
julia> using JLD
julia> using SparseArrays
julia> JLD.save("/tmp/sparse.jld", "A", sprand(500, 500, 0.001))
julia> exit()
Load file with SparseArrays
loaded
$ julia1.6 --quiet
julia> using JLD
julia> using SparseArrays
julia> JLD.load("/tmp/sparse.jld", "A")
500×500 SparseMatrixCSC{Float64, Int64} with 238 stored entries:
⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠌⠀⠀⠀⠐⠀⠀⠈⠀⡀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠐⠂⠀⠀⠀⠀⠀⠀⠀⠈⠀⠀⠀⡀⠀⠐⠀
⠀⠀⢀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠐⡀⠀⠀⠀⠀⠀⠀⠀⠀⠒⠀⠀⠀⠀⠀⠀⠐⡀⠐⠀⠀⠀⡀⠁⠀⠀⠀⠂⠀⠈⠂
⢀⠀⠈⠀⠀⠀⠀⠀⠁⠀⠀⠀⠀⠀⠀⠀⠄⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠄⠀⠀⠀⠀⠀⠀⠁⠀⠀⠠⠀⠀⠄⠀⠀
⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⡀⠀⠀⠀⡃⡀⠀⠀⠀⠀⠀⠀⠀⢀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠂⠁⠀⠀⠀
⠂⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠁⠂⠈⠀⠀⠀⠀⠂⠠⠀⠀⠀⡀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠄⠀⠀⠁⠀⠀⠀⠀⠠⠀⠐
⠀⠠⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠐⠀⠀⠀⠀⠀⠈⠀⠀⠀⠀⠀⠀⠄⠀⢀⠀⢀⠀⠀⠀⠀⠀⠀⠀⠈⡀
⠀⢈⠄⠐⠀⠀⠀⠀⠀⠀⠠⠀⠀⡈⠀⠀⠀⠀⠀⠀⠢⠀⠀⠂⡀⠂⠀⠀⠀⠂⢀⠀⠀⠀⠀⠀⠀⠀⠄⠀⡀⠀⠀⠀⠀⠀⠀⠀⠈
⠀⠀⠄⠀⠀⠀⠊⠀⠀⠀⠀⠈⠀⠠⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⢀⠀⠀⠀⠀⠁⠀⠀⠀⠀⠀⠀⠄⠄⠀⠀⠁⠀⠀⠀⠀⠀⠀⠀⠀
⠐⠀⠀⠀⠀⠈⠀⠀⠀⠀⢀⠀⠀⠀⠀⠀⠀⠀⠀⠂⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀
⠀⢁⠀⠀⠀⠀⠀⠀⢤⠂⠀⡀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠈⠂⠈⠀⠀⠀⠀⠀⠀⠀⠁⠀⠀⠀⠀⠠⠀⠀⠀⠀⠐⠀⠠
⠀⠀⠈⠀⠀⠐⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⡀⠀⠐⠀⠀⠀⠀⠀⠀⠁⠂⠀⠀⠁⠀⠀⠀⠈⠀⠄⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀
⠀⠀⠨⠀⢀⠀⠀⠀⠀⠀⠐⠀⠀⠀⠀⠀⠀⠀⠀⠀⠐⠀⠀⠀⠀⠀⠂⠀⠀⠀⠀⠂⠀⠀⠀⠀⠀⠀⠀⠀⢀⠠⠀⠀⠈⠀⠂⠀⠀
⠀⠀⠈⠀⠐⠀⠀⠀⠀⠀⠂⠀⠀⠁⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⡀⠀⠀⠀⠀⠃⠀⠀⠀⠈⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀
⠀⠈⢀⠀⠀⡀⠀⠀⠀⠀⠀⠀⠀⠈⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠐⠐⠀⠉⠀⠠⠀⠀⠀⠀⠀⠀⠀⠀⠀⠁⡀⠀⠀⠀⠀⠀⠀⠀
⠀⠀⠀⠀⢀⠀⠀⠀⠀⠀⣀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠐⠀⠀⡀⠀⠀⠀⢀⠀⠀⠀⠀⠀⠄⡀⡀⠀⠀⠀⠀⠄⠀⠀
⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠐⠀⠀⠠⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⢀⡂⠀⠀⠀⠀⠀⠀⢀⠀⠀⠀⠀⠀⠀⠀
⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⢀⠂⠀⠄⠈⠐⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⡀⠀⠀⠀⠀⠀⠄⠀⠀⠀⠀⠀⠀⠀⠀⠄⡀⠁
⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠠⠀⠀⠠⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⢀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠂⠀⠀⠂
⠀⠀⠀⠀⠀⠀⠐⠀⠢⠀⠀⠀⠀⠀⠀⠀⠀⢐⠀⠀⠀⠀⠁⠀⠀⠀⠀⠀⠀⠈⠀⠀⠀⠀⠀⠀⠀⠀⢠⠀⠀⠁⠀⠀⠀⠁⠀⠀⠀
⠀⠀⠀⠀⠐⠀⠀⠀⠀⠀⠀⠄⠀⠀⠀⠐⠀⠀⠀⠀⠂⠀⠀⠀⠀⠀⠀⢠⠀⠀⠐⠀⠀⠀⠀⠀⠀⠀⠀⢀⠀⠀⠀⢀⠀⠀⠀⠀⠀
⡀⠀⠀⠀⠀⠀⠈⠀⠀⠀⠀⠀⠀⠀⡈⠀⠠⠀⠀⠀⠂⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠁⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀
⠀⠀⠀⠀⠠⠀⠀⠐⠀⠀⠀⡀⠀⠁⠀⠠⠀⠐⠀⠀⠀⠀⠀⠀⠀⠀⠠⢀⠀⠠⠀⠀⠀⠀⠀⠈⠀⠀⠄⠀⠐⠀⠁⠀⠐⠀⠀⠀⠀
⠀⠐⠀⠀⠀⠀⠀⠀⠀⠀⠐⠀⠀⠀⢀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠠⠀⠀⠀⠀⠀⠀⠀⠂⠀⠀⠀⠀⠈⠀⠀⠀⠀⠀⠀⠂⠀⠀⠀⠀
⠀⠀⠀⡀⠀⠀⠀⠀⠁⠀⠀⠀⠀⠀⠀⠀⠄⠀⠀⠀⠀⠊⠀⠀⠀⠀⠐⠀⠄⠀⠀⠀⠀⠀⠀⠁⠀⠠⠀⠀⠀⠂⠀⠀⠀⢀⠀⠀⠀
⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠈⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠁⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠁⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀
julia> exit()
Load without first loading SparseArrays
package
$ julia1.6 --quiet
julia> using JLD
julia> JLD.load("/tmp/sparse.jld", "A")
┌ Warning: type SparseArrays.SparseMatrixCSC{Core.Float64,Core.Int64} not present in workspace; reconstructing
└ @ JLD ~/.julia/dev/JLD/src/jld_types.jl:697
JLD.var"##SparseArrays.SparseMatrixCSC{Core.Float64,Core.Int64}#245"(500, 500, [1, 1, 1, 3, 3, 3, 3, 3, 5, 6 … 230, 232, 233, 236, 236, 236, 236, 236, 237, 239], [88, 426, 56, 173, 185, 270, 139, 202, 461, 115 … 21, 8, 103, 26, 118, 328, 357, 126, 87, 195], [0.7953567356972984, 0.0716880289372368, 0.22690937900918873, 0.03390742491283438, 0.29001481465266465, 0.36939444686650447, 0.5474073279227187, 0.8277341470615132, 0.5776754929730707, 0.3565983156745265 … 0.6330306324408845, 0.35275101068114045, 0.5322983156557552, 0.12336164548926853, 0.24739034132488058, 0.5309345691003586, 0.5948351346842831, 0.39039170941233614, 0.4162596311121227, 0.23686677532224243])
julia> exit()
I had this issue as well -- appeared to happen whenever I mixed Core.Tuple and Core.Array in the type, e.g. Core.Array{Core.Tuple{Core.Int64, Core.Array{Core.Float64}}}
. Updating JLD v0.10.0 ⇒ v0.12.3
in Pkg -- which also triggered an update of many other things, like HDF5 v0.13.6 ⇒ v0.15.5
-- fixed it.
We (me + @grig-guz) are trying to store a (large) CSV dataset into a sparse matrix and subsequently put that in a JLD blob. However we are getting some weird type error when trying to load it again: ERROR: stored type SparseArrays.SparseMatrixCSC{Core.Int8,Core.Int64} does not match currently loaded type
The following script is how we package it up