Exception running test libgit2

ajgiuliani commented 7 years ago

I ran /julia -e "Base.runtests()" to test an homebrew installation of julia on MacOS 10.10.5. I got the following the following error:

Exception running test libgit2 :
On worker 2:
LoadError: There was an error during testing
 in record at ./test.jl:397
 in do_test at ./test.jl:281
 in #198 at /usr/local/Cellar/julia/0.5.1/share/julia/test/libgit2.jl:221
 in mktempdir at ./file.jl:286
 in mktempdir at ./file.jl:284
 in include_string at ./loading.jl:441
 in jlcall_include_string_33141 at /usr/local/Cellar/julia/0.5.1/lib/julia/sys.dylib:?
 in include_from_node1 at ./loading.jl:491
 in jlcall_include_from_node1_20276 at /usr/local/Cellar/julia/0.5.1/lib/julia/sys.dylib:?
 in macro expansion at ./util.jl:230 [inlined]
 in runtests at /usr/local/Cellar/julia/0.5.1/share/julia/test/testdefs.jl:7
 in #24 at /usr/local/Cellar/julia/0.5.1/share/julia/test/runtests.jl:44
 in #645 at ./multi.jl:1421
 in run_work_thunk at ./multi.jl:1001
 in macro expansion at ./multi.jl:1421 [inlined]
 in #644 at ./event.jl:68
while loading /usr/local/Cellar/julia/0.5.1/share/julia/test/libgit2.jl, in expression starting on line 130
ERROR: LoadError: Some tests exited with errors.
 in (::##19#27)() at /usr/local/Cellar/julia/0.5.1/share/julia/test/runtests.jl:72
 in cd(::##19#27, ::String) at ./file.jl:59
 in include_from_node1(::String) at ./loading.jl:488
 in include_from_node1(::String) at /usr/local/Cellar/julia/0.5.1/lib/julia/sys.dylib:?
 in process_options(::Base.JLOptions) at ./client.jl:265
 in _start() at ./client.jl:321
 in _start() at /usr/local/Cellar/julia/0.5.1/lib/julia/sys.dylib:?
while loading /usr/local/Cellar/julia/0.5.1/share/julia/test/runtests.jl, in expression starting on line 26
ERROR: A test has failed. Please submit a bug report (https://github.com/JuliaLang/julia/issues)
including error messages above and the output of versioninfo():
Julia Version 0.5.1
Commit 6445c82d0* (2017-03-05 13:25 UTC)
Platform Info:
  OS: macOS (x86_64-apple-darwin14.5.0)
  CPU: Intel(R) Core(TM) i7-4770HQ CPU @ 2.20GHz
  WORD_SIZE: 64
  BLAS: libopenblas (DYNAMIC_ARCH NO_AFFINITY Haswell)
  LAPACK: libopenblas
  LIBM: libopenlibm
  LLVM: libLLVM-3.7.1 (ORCJIT, haswell)

 in runtests(::Array{String,1}, ::Int64) at ./interactiveutil.jl:571
 in runtests() at ./interactiveutil.jl:560
 in eval(::Module, ::Any) at ./boot.jl:234
 in eval(::Module, ::Any) at /usr/local/Cellar/julia/0.5.1/lib/julia/sys.dylib:?
 in process_options(::Base.JLOptions) at ./client.jl:242
 in _start() at ./client.jl:321
 in _start() at /usr/local/Cellar/julia/0.5.1/lib/julia/sys.dylib:?

Any ideas of what happened ? Regards, Alex

yuyichao commented 7 years ago

Is there no other output?

ajgiuliani commented 7 years ago

There is no other output after issuing Base.runtests().

nalimilan commented 7 years ago

Well, there was necessarily more output showing the list of tests which were run. Isn't there any error message buried there? Could you post the full output in a gist?

ajgiuliani commented 7 years ago

Indeed, several tests were passed. You'll find the full output below.

/usr/local/Cellar/julia/0.5.1/bin/julia From worker 4: linalg/dense From worker 4: linalg/schur From worker 4: linalg/special From worker 3: linalg/qr From worker 4: linalg/eigen From worker 5: linalg/matmul From worker 4: linalg/svd From worker 3: linalg/bunchkaufman From worker 4: linalg/tridiag From worker 3: linalg/bidiag From worker 5: linalg/lapack From worker 5: linalg/givens From worker 3: linalg/pinv From worker 4: linalg/diagonal From worker 4: linalg/symmetric From worker 3: linalg/lu From worker 4: linalg/generic From worker 5: linalg/cholesky From worker 5: linalg/hessenberg From worker 3: From worker 5: linalg/arnoldi WARNING: Method definition From worker 4: linalg/lq From worker 4: inference WARNING: Method definition From worker 4: keywordargs From worker 2: linalg/triangular From worker 2: printf From worker 2: char WARNING: static parameter The method will not be callable. From worker 5: core From worker 5: triplequote From worker 5: unicode From worker 2: string From worker 2: dict From worker 2: hashing From worker 2: iobuffer From worker 2: staged From worker 5: dates From worker 4: numbers From worker 4: tuple From worker 4: reduce From worker 4: reducedim From worker 5: arrayops From worker 4: random From worker 4: intfuncs From worker 4: simdloop From worker 4: vecelement From worker 2: offsetarray From worker 4: blas From worker 5: abstractarray From worker 5: copy From worker 5: math From worker 5: fastmath From worker 5: functional From worker 5: operators From worker 5: path From worker 5: ccall From worker 4: bitarray From worker 4: loading From worker 5: parse From worker 5: bigfloat From worker 4: bigint From worker 4: statistics From worker 3: subarray From worker 4: spawn From worker 3: backtrace From worker 3: priorityqueue From worker 4: in 22.54 seconds, maxrss From worker 5: sorting From worker 3: file From worker 3: version From worker 4: read From worker 4: pollfd From worker 3: resolve From worker 4: mpfr From worker 5: mmap From worker 5: socket From worker 5: floatapprox From worker 4: complex From worker 5: datafmt From worker 5: regex From worker 4: reflection From worker 4: combinatorics From worker 4: sysinfo From worker 5: float16 From worker 4: env From worker 5: rounding From worker 5: mod2pi From worker 5: euler From worker 3: broadcast From worker 3: lineedit From worker 3: replcompletions From worker 2: sparse From worker 5: show From worker 2: replutil From worker 3: repl From worker 3: goto From worker 3: llvmcall From worker 5: sets From worker 3: grisu From worker 3: meta From worker 3: stacktraces From worker 2: test From worker 3: profile From worker 4: ranges From worker 3: docs From worker 3: base64 From worker 5: nullable From worker 4: markdown Warning: threaded loop executed From worker 4: threads From worker 3: serialize From worker 4: enums From worker 4: i18n From worker 4: workspace From worker 2: libgit2 From worker 2: Expression: From worker 4: libdl From worker 4: int From worker 6: intset From worker 6: floatfuncs From worker 5: misc From worker 5: inline From worker 5: boundscheck From worker 5: error WARNING: Method definition From worker 4: checked From worker 4: cartesian From worker 5: ambiguous From worker 5: Skipping Base.>: From worker 5: Skipping From worker 5: Skipping From worker 5: in 1.64 From worker 5: dsp From worker 4: fft From worker 5: examples From worker 6: parallel From worker 3: cmdlineargs Exception running test libgit2 : On worker 2: LoadError: There was an error in record at ./test.jl:397 in do_test at ./test.jl:281 in #198 at /usr/local/Cellar/julia in mktempdir at ./file.jl:286 in mktempdir at ./file.jl:284 in include_string at ./loading.jl:441 in jlcall_include_string_33141 in include_from_node1 at in jlcall_include_from_node1_20276 in macro expansion at ./util.jl:230 in runtests at /usr/local/Cellar/j in #24 at /usr/local/Cellar/julia/ in #645 at ./multi.jl:1421 in run_work_thunk at ./multi.jl:1001 in macro expansion at ./multi.jl:1421 in #644 at ./event.jl:68 while loading /usr/local/Cellar/ju ERROR: LoadError: Some tests in (::##19#27)() at /usr/local/Cel in cd(::##19#27, ::String) in include_from_node1(::String) in include_from_node1(::String) in process_options(::Base.JLOptions) in _start() at ./client.jl:321 in _start() at /usr/local/Cellar/j while loading /usr/local/Cellar/ju ERROR: A test has failed. including error messages Julia Version 0.5.1 Commit 6445c82d0* (2017-03-05 Platform Info: OS: macOS (x86_64-apple-darwin14.5.0) CPU: Intel(R) Core(TM) i7-4770HQ WORD_SIZE: 64 BLAS: libopenblas (DYNAMIC_ARCH LAPACK: libopenblas LIBM: libopenlibm LLVM: libLLVM-3.7.1 (ORCJIT, haswell) -e "Base.runtests()" in 74.95 seconds, maxrss 314.15 MB in 9.01 seconds, maxrss 320.60 MB in 3.59 seconds, maxrss 324.07 MB in 116.35 seconds, maxrss 369.35 MB in 53.62 seconds, maxrss 368.41 MB in 151.70 seconds, maxrss 330.60 MB in 11.22 seconds, maxrss 371.31 MB in 44.15 seconds, maxrss 391.85 MB in 26.43 seconds, maxrss 398.61 MB in 35.20 seconds, maxrss 419.66 MB in 47.11 seconds, maxrss 355.16 MB in 5.61 seconds, maxrss 359.09 MB in 11.07 seconds, maxrss 490.37 MB in 53.76 seconds, maxrss 447.88 MB in 11.44 seconds, maxrss 452.54 MB in 37.67 seconds, maxrss 490.37 MB in 7.64 seconds, maxrss 452.54 MB in 68.75 seconds, maxrss 410.15 MB in 0.80 seconds, maxrss 410.31 MB linalg/uniformscaling in 33.37 seconds, maxrss 490.37 MB in 30.92 seconds, maxrss 447.38 MB f(Tuple{Vararg{Int64, #N<:Any}}, AbstractArray{#T<:Any, #N<:Any}) in module Main at /usr/local/Cellar/julia/0.5.1/share/julia/test/core.jl:723 overwritten at /usr/local/Cellar/julia/0.5.1/share/julia/test/core.jl:729. in 62.42 seconds, maxrss 531.99 MB in 0.85 seconds, maxrss 532.37 MB f() in module JLCall14301 at /usr/local/Cellar/julia/0.5.1/share/julia/test/core.jl:3546 overwritten at /usr/local/Cellar/julia/0.5.1/share/julia/test/core.jl:3556. in 1.46 seconds, maxrss 533.27 MB in 328.20 seconds, maxrss 698.84 MB in 14.83 seconds, maxrss 720.32 MB in 0.77 seconds, maxrss 723.71 MB T does not occur in signature for bad_tvars at /usr/local/Cellar/julia/0.5.1/share/julia/test/core.jl:4621. in 39.16 seconds, maxrss 1543.77 MB in 0.02 seconds, maxrss 1543.85 MB in 4.34 seconds, maxrss 1553.98 MB in 14.16 seconds, maxrss 738.65 MB in 10.80 seconds, maxrss 756.93 MB in 5.42 seconds, maxrss 767.06 MB in 0.76 seconds, maxrss 767.99 MB in 0.77 seconds, maxrss 769.13 MB in 33.42 seconds, maxrss 1589.54 MB in 79.41 seconds, maxrss 636.86 MB in 1.57 seconds, maxrss 639.36 MB in 3.80 seconds, maxrss 663.13 MB in 14.55 seconds, maxrss 678.04 MB in 43.45 seconds, maxrss 1697.22 MB in 10.89 seconds, maxrss 701.73 MB in 0.68 seconds, maxrss 704.92 MB in 1.22 seconds, maxrss 705.93 MB in 1.82 seconds, maxrss 710.71 MB in 58.58 seconds, maxrss 879.05 MB in 26.96 seconds, maxrss 749.88 MB in 68.28 seconds, maxrss 1714.70 MB in 1.21 seconds, maxrss 1716.45 MB in 39.29 seconds, maxrss 1720.45 MB in 2.99 seconds, maxrss 1720.45 MB in 64.88 seconds, maxrss 1720.45 MB in 0.84 seconds, maxrss 1720.45 MB in 6.08 seconds, maxrss 1720.45 MB in 7.64 seconds, maxrss 1720.45 MB in 161.78 seconds, maxrss 776.69 MB in 0.09 seconds, maxrss 776.69 MB in 3.22 seconds, maxrss 1720.45 MB in 0.25 seconds, maxrss 1720.45 MB in 1.95 seconds, maxrss 776.69 MB in 9.95 seconds, maxrss 776.69 MB in 354.40 seconds, maxrss 855.28 MB [stdio passthrough ok] in 0.77 seconds, maxrss 855.28 MB in 1.58 seconds, maxrss 855.28 MB 776.69 MB in 45.07 seconds, maxrss 1720.45 MB in 41.05 seconds, maxrss 855.28 MB in 1.35 seconds, maxrss 855.28 MB in 23.56 seconds, maxrss 776.69 MB in 3.84 seconds, maxrss 776.69 MB in 4.54 seconds, maxrss 855.28 MB in 2.45 seconds, maxrss 776.69 MB in 20.21 seconds, maxrss 1720.45 MB in 3.48 seconds, maxrss 1720.45 MB in 0.34 seconds, maxrss 1720.45 MB in 8.16 seconds, maxrss 776.69 MB in 9.23 seconds, maxrss 1720.45 MB in 0.60 seconds, maxrss 1720.45 MB in 7.35 seconds, maxrss 776.69 MB in 0.38 seconds, maxrss 776.69 MB in 0.76 seconds, maxrss 776.69 MB in 1.33 seconds, maxrss 1720.45 MB in 0.59 seconds, maxrss 776.69 MB in 0.92 seconds, maxrss 1720.45 MB in 0.29 seconds, maxrss 1720.45 MB in 1.05 seconds, maxrss 1720.45 MB in 34.17 seconds, maxrss 855.28 MB in 3.82 seconds, maxrss 855.28 MB in 4.55 seconds, maxrss 855.28 MB in 290.04 seconds, maxrss 947.55 MB in 26.61 seconds, maxrss 1720.45 MB in 6.22 seconds, maxrss 947.55 MB in 6.87 seconds, maxrss 855.28 MB in 0.05 seconds, maxrss 855.28 MB in 0.18 seconds, maxrss 855.28 MB in 2.92 seconds, maxrss 1720.45 MB in 2.62 seconds, maxrss 855.28 MB in 0.44 seconds, maxrss 855.28 MB in 1.60 seconds, maxrss 855.28 MB in 8.98 seconds, maxrss 947.55 MB in 4.09 seconds, maxrss 855.28 MB in 39.95 seconds, maxrss 776.69 MB in 4.09 seconds, maxrss 855.28 MB in 0.32 seconds, maxrss 855.28 MB in 13.16 seconds, maxrss 1720.45 MB in 5.13 seconds, maxrss 776.69 MB in order in 4.22 seconds, maxrss 776.69 MB in 6.80 seconds, maxrss 855.28 MB in 2.04 seconds, maxrss 776.69 MB in 0.02 seconds, maxrss 776.69 MB in 1.27 seconds, maxrss 776.69 MB Test Failed isfile(joinpath(repo_path,LibGit2.Consts.HEAD_FILE)) in 2.36 seconds, maxrss 776.69 MB in 3.43 seconds, maxrss 776.69 MB in 1.20 seconds, maxrss 196.09 MB in 4.34 seconds, maxrss 207.57 MB in 21.63 seconds, maxrss 1720.45 MB in 0.27 seconds, maxrss 1720.45 MB in 4.94 seconds, maxrss 1720.45 MB in 0.72 seconds, maxrss 1720.45 MB ambig(Any, Integer) in module Main at /usr/local/Cellar/julia/0.5.1/share/julia/test/ambiguous.jl:7 overwritten at /usr/local/Cellar/julia/0.5.1/share/julia/test/ambiguous.jl:79. in 14.31 seconds, maxrss 776.69 MB in 0.01 seconds, maxrss 776.69 MB Skipping Base.<| Base.active_repl Base.active_repl_backend seconds, maxrss 1720.45 MB in 15.06 seconds, maxrss 1720.45 MB in 34.24 seconds, maxrss 776.69 MB in 22.24 seconds, maxrss 1720.45 MB in 88.47 seconds, maxrss 208.04 MB in 136.91 seconds, maxrss 855.28 MB during testing /0.5.1/share/julia/test/libgit2.jl:221 at /usr/local/Cellar/julia/0.5.1/lib/julia/sys.dylib:? ./loading.jl:491 at /usr/local/Cellar/julia/0.5.1/lib/julia/sys.dylib:? [inlined] ulia/0.5.1/share/julia/test/testdefs.jl:7 0.5.1/share/julia/test/runtests.jl:44 [inlined] lia/0.5.1/share/julia/test/libgit2.jl, in expression starting on line 130 exited with errors. lar/julia/0.5.1/share/julia/test/runtests.jl:72 at ./file.jl:59 at ./loading.jl:488 at /usr/local/Cellar/julia/0.5.1/lib/julia/sys.dylib:? at ./client.jl:265 ulia/0.5.1/lib/julia/sys.dylib:? lia/0.5.1/share/julia/test/runtests.jl, in expression starting on line 26 Please submit a bug report (https://github.com/JuliaLang/julia/issues) above and the output of versioninfo(): 13:25 UTC) CPU @ 2.20GHz NO_AFFINITY Haswell)

in runtests(::Array{String,1}, ::Int64) at ./interactiveutil.jl:571 in runtests() at ./interactiveutil.jl:560 in eval(::Module, ::Any) at ./boot.jl:234 in eval(::Module, ::Any) at /usr/local/Cellar/julia/0.5.1/lib/julia/sys.dylib:? in process_options(::Base.JLOptions) at ./client.jl:242 in _start() at ./client.jl:321 in _start() at /usr/local/Cellar/julia/0.5.1/lib/julia/sys.dylib:?

tkelman commented 7 years ago

the failure is isfile(joinpath(repo_path,LibGit2.Consts.HEAD_FILE))

this is probably because the homebrew libgit2 version doesn't match what that version of julia supports. build 0.5.2 from source without using homebrew, or use the mac binaries.

ajgiuliani commented 7 years ago

Homebrew Julia 0.5.0 works fine, but I could get any later version to work. Thank you for your help, I'll switched to the binaries.

JuliaLang / julia

Exception running test libgit2 #22407