nonneg_lsq v0.6 deprecations

[djsegal]

The Julia REPL prints out the following error trace:

julia> x = nonneg_lsq(A,b)
WARNING: Array{T}(::Type{T}, m::Int, n::Int) is deprecated, use Array{T}(m, n) instead.
Stacktrace:
 [1] depwarn(::String, ::Symbol) at ./deprecated.jl:70
 [2] Array(::Type{Float64}, ::Int64, ::Int64) at ./deprecated.jl:57
 [3] #pivot#10(::Bool, ::Array{Any,1}, ::Function, ::Array{Float64,2}, ::Array{Float64,2}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/pivot.jl:99
 [4] #nonneg_lsq#19(::Symbol, ::Symbol, ::Bool, ::Array{Any,1}, ::Function, ::Array{Float64,2}, ::Array{Float64,2}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/interface.jl:61
 [5] #nonneg_lsq#20(::Array{Any,1}, ::Function, ::Array{Float64,2}, ::Array{Float64,1}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/interface.jl:70
 [6] nonneg_lsq(::Array{Float64,2}, ::Array{Float64,1}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/interface.jl:70
 [7] eval(::Module, ::Any) at ./boot.jl:235
 [8] eval_user_input(::Any, ::Base.REPL.REPLBackend) at ./REPL.jl:66
 [9] macro expansion at ./REPL.jl:97 [inlined]
 [10] (::Base.REPL.##1#2{Base.REPL.REPLBackend})() at ./event.jl:73
while loading no file, in expression starting on line 0
WARNING: ~(B::BitArray) is deprecated, use .~(B) instead.
Stacktrace:
 [1] depwarn(::String, ::Symbol) at ./deprecated.jl:70
 [2] ~(::BitArray{1}) at ./deprecated.jl:57
 [3] #pivot#9(::Float64, ::Int64, ::Function, ::Array{Float64,2}, ::Array{Float64,1}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/pivot.jl:38
 [4] #pivot#10(::Bool, ::Array{Any,1}, ::Function, ::Array{Float64,2}, ::Array{Float64,2}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/pivot.jl:101
 [5] #nonneg_lsq#19(::Symbol, ::Symbol, ::Bool, ::Array{Any,1}, ::Function, ::Array{Float64,2}, ::Array{Float64,2}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/interface.jl:61
 [6] #nonneg_lsq#20(::Array{Any,1}, ::Function, ::Array{Float64,2}, ::Array{Float64,1}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/interface.jl:70
 [7] nonneg_lsq(::Array{Float64,2}, ::Array{Float64,1}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/interface.jl:70
 [8] eval(::Module, ::Any) at ./boot.jl:235
 [9] eval_user_input(::Any, ::Base.REPL.REPLBackend) at ./REPL.jl:66
 [10] macro expansion at ./REPL.jl:97 [inlined]
 [11] (::Base.REPL.##1#2{Base.REPL.REPLBackend})() at ./event.jl:73
while loading no file, in expression starting on line 0
WARNING: A::AbstractArray & B::AbstractArray is deprecated, use A .& B instead.
Stacktrace:
 [1] depwarn(::String, ::Symbol) at ./deprecated.jl:70
 [2] &(::BitArray{1}, ::BitArray{1}) at ./deprecated.jl:57
 [3] #pivot#9(::Float64, ::Int64, ::Function, ::Array{Float64,2}, ::Array{Float64,1}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/pivot.jl:41
 [4] #pivot#10(::Bool, ::Array{Any,1}, ::Function, ::Array{Float64,2}, ::Array{Float64,2}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/pivot.jl:101
 [5] #nonneg_lsq#19(::Symbol, ::Symbol, ::Bool, ::Array{Any,1}, ::Function, ::Array{Float64,2}, ::Array{Float64,2}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/interface.jl:61
 [6] #nonneg_lsq#20(::Array{Any,1}, ::Function, ::Array{Float64,2}, ::Array{Float64,1}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/interface.jl:70
 [7] nonneg_lsq(::Array{Float64,2}, ::Array{Float64,1}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/interface.jl:70
 [8] eval(::Module, ::Any) at ./boot.jl:235
 [9] eval_user_input(::Any, ::Base.REPL.REPLBackend) at ./REPL.jl:66
 [10] macro expansion at ./REPL.jl:97 [inlined]
 [11] (::Base.REPL.##1#2{Base.REPL.REPLBackend})() at ./event.jl:73
while loading no file, in expression starting on line 0
WARNING: ~(B::BitArray) is deprecated, use .~(B) instead.
Stacktrace:
 [1] depwarn(::String, ::Symbol) at ./deprecated.jl:70
 [2] ~(::BitArray{1}) at ./deprecated.jl:57
 [3] #pivot#9(::Float64, ::Int64, ::Function, ::Array{Float64,2}, ::Array{Float64,1}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/pivot.jl:77
 [4] #pivot#10(::Bool, ::Array{Any,1}, ::Function, ::Array{Float64,2}, ::Array{Float64,2}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/pivot.jl:101
 [5] #nonneg_lsq#19(::Symbol, ::Symbol, ::Bool, ::Array{Any,1}, ::Function, ::Array{Float64,2}, ::Array{Float64,2}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/interface.jl:61
 [6] #nonneg_lsq#20(::Array{Any,1}, ::Function, ::Array{Float64,2}, ::Array{Float64,1}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/interface.jl:70
 [7] nonneg_lsq(::Array{Float64,2}, ::Array{Float64,1}) at /Applications/JuliaPro-0.5.1.1.app/Contents/Resources/pkgs-0.5.1.1/lib/v0.6/NonNegLeastSquares/src/interface.jl:70
 [8] eval(::Module, ::Any) at ./boot.jl:235
 [9] eval_user_input(::Any, ::Base.REPL.REPLBackend) at ./REPL.jl:66
 [10] macro expansion at ./REPL.jl:97 [inlined]
 [11] (::Base.REPL.##1#2{Base.REPL.REPLBackend})() at ./event.jl:73
while loading no file, in expression starting on line 0

[JeffFessler]

Closing this issue because I'm pretty sure it is resolved by now. If not, please reopen with a MWE.