Open jmmshn opened 1 year ago
Hi, I'm interested in using OrganicMaterialsDB but I'm running into the following error when I try to download the data. I tried digging into this a bit myselfPlease let me know if I'm doing something silly.
OrganicMaterialsDB
The exception seems to be triggered here: https://github.com/JuliaLang/julia/blob/3b76b25b648cc1fa6187b118c685819a4111a5d2/base/env.jl#L161-L166
Does this mean I'm suppose to set some ENV variable that I forgot to? Any help would be greatly appreciated! Thanks in advance!
julia> MLDatasets.OrganicMaterialsDB() This program has requested access to the data dependency OrganicMaterialsDB. which is not currently installed. It can be installed automatically, and you will not see this message again. Dataset : The Organic Materials Database (OMDB) Website : https://omdb.mathub.io/dataset Do you want to download the dataset from Any[] to "/Users/shen9/.julia/datadeps/OrganicMaterialsDB"? [y/n] y ERROR: MethodError: no method matching xor() Closest candidates are: xor(::T, ::T) where T<:Union{Int128, Int16, Int32, Int64, Int8, UInt128, UInt16, UInt32, UInt64, UInt8} at int.jl:333 xor(::Bool, ::Bool) at bool.jl:71 xor(::Bool, ::Missing) at missing.jl:171 ... Stacktrace: [1] _broadcast_getindex_evalf @ ./broadcast.jl:648 [inlined] [2] _broadcast_getindex @ ./broadcast.jl:621 [inlined] [3] getindex @ ./broadcast.jl:575 [inlined] [4] copy @ ./broadcast.jl:898 [inlined] [5] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{0}, Nothing, typeof(xor), Tuple{}}) @ Base.Broadcast ./broadcast.jl:883 [6] checksum(hasher::Function, filenames::Vector{Any}) @ DataDeps ~/.julia/packages/DataDeps/ae6dT/src/verification.jl:90 [7] hexchecksum(hasher::Function, filename::Vector{Any}) @ DataDeps ~/.julia/packages/DataDeps/ae6dT/src/verification.jl:92 [8] run_checksum(hasher::Function, path::Vector{Any}) @ DataDeps ~/.julia/packages/DataDeps/ae6dT/src/verification.jl:43 [9] run_checksum @ ~/.julia/packages/DataDeps/ae6dT/src/verification.jl:65 [inlined] [10] checksum_pass(hash::Nothing, fetched_path::Vector{Any}) @ DataDeps ~/.julia/packages/DataDeps/ae6dT/src/resolution_automatic.jl:142 [11] download(datadep::DataDeps.DataDep{Nothing, Vector{Any}, typeof(DataDeps.fetch_default), typeof(identity)}, localdir::String; remotepath::Vector{Any}, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) @ DataDeps ~/.julia/packages/DataDeps/ae6dT/src/resolution_automatic.jl:79 [12] download @ ~/.julia/packages/DataDeps/ae6dT/src/resolution_automatic.jl:70 [inlined] [13] handle_missing @ ~/.julia/packages/DataDeps/ae6dT/src/resolution_automatic.jl:10 [inlined] [14] _resolve(datadep::DataDeps.DataDep{Nothing, Vector{Any}, typeof(DataDeps.fetch_default), typeof(identity)}, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/ae6dT/src/resolution.jl:83 [15] resolve(datadep::DataDeps.DataDep{Nothing, Vector{Any}, typeof(DataDeps.fetch_default), typeof(identity)}, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/ae6dT/src/resolution.jl:29 [16] resolve(datadep_name::String, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/ae6dT/src/resolution.jl:54 [17] resolve @ ~/.julia/packages/DataDeps/ae6dT/src/resolution.jl:73 [inlined] [18] #13 @ ~/.julia/packages/MLDatasets/bg0uc/src/download.jl:14 [inlined] [19] withenv(f::MLDatasets.var"#13#14"{String, Nothing}, keyvals::Pair{String, String}) @ Base ./env.jl:161 [20] with_accept @ ~/.julia/packages/MLDatasets/bg0uc/src/download.jl:7 [inlined] [21] #datadir#12 @ ~/.julia/packages/MLDatasets/bg0uc/src/download.jl:11 [inlined] [22] datadir @ ~/.julia/packages/MLDatasets/bg0uc/src/download.jl:11 [inlined] [23] process_data_if_needed(::Type{OrganicMaterialsDB}; dir::Nothing) @ MLDatasets ~/.julia/packages/MLDatasets/bg0uc/src/datasets/graphs/organicmaterialsdb.jl:55 [24] OrganicMaterialsDB(; split::Symbol, dir::Nothing) @ MLDatasets ~/.julia/packages/MLDatasets/bg0uc/src/datasets/graphs/organicmaterialsdb.jl:42 [25] OrganicMaterialsDB() @ MLDatasets ~/.julia/packages/MLDatasets/bg0uc/src/datasets/graphs/organicmaterialsdb.jl:41 [26] top-level scope @ REPL[8]:1
@CarloLucibello should we use ManualDataDeps instead of DataDeps here? Looks like the empty list for download can be the cause of this issue.
Hi, I'm interested in using
OrganicMaterialsDB
but I'm running into the following error when I try to download the data. I tried digging into this a bit myselfPlease let me know if I'm doing something silly.The exception seems to be triggered here: https://github.com/JuliaLang/julia/blob/3b76b25b648cc1fa6187b118c685819a4111a5d2/base/env.jl#L161-L166
Does this mean I'm suppose to set some ENV variable that I forgot to? Any help would be greatly appreciated! Thanks in advance!