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JuliaMath / Cubature.jl

One- and multi-dimensional adaptive integration routines for the Julia language
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c++ error while importing #11

Closed sennosays closed 8 years ago

sennosays commented 8 years ago

Hi,

I recently upgraded to Julia version 0.4.0 on my Mac running OS X Yosemite Version 10.10.5. I was able to add the package Cubature with no problems but when I try to import it:

using Cubature

I get the following error and Julia crashes:

julia> using Cubature Assertion failed: (ctx->gensym_assigned.at(idx)), function emit_expr, file codegen.cpp, line 3130.

signal (6): Abort trap: 6 __pthread_kill at /usr/lib/system/libsystem_kernel.dylib (unknown line) Abort trap: 6

Because I believe this may be a C/C++ complier error I've attached the information regarding gcc/g++

Tyche: ~/Research/notebooks $ gcc --version Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 Apple LLVM version 7.0.0 (clang-700.1.76) Target: x86_64-apple-darwin14.5.0 Thread model: posix

Tyche: ~/Research/notebooks $ g++ --version Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 Apple LLVM version 7.0.0 (clang-700.1.76) Target: x86_64-apple-darwin14.5.0 Thread model: posix

Is this a known issue? Have I not upgraded some important software?

stevengj commented 8 years ago

I just tried it with MacOS 10.11.1 and it works fine for me. Your compiler shouldn't matter, because Pkg.build("Cubature") downloads a precompiled binary of the library. Unless you built Julia from source rather than downloading the binary?

stevengj commented 8 years ago

What is the output of versioninfo(true) in Julia?

sennosays commented 8 years ago

julia> versioninfo(true)

Julia Version 0.4.0

Commit 0ff703b* (2015-10-08 06:20 UTC)

Platform Info:

System: Darwin (x86_64-apple-darwin14.5.0)

CPU: Intel(R) Core(TM) i5-3210M CPU @ 2.50GHz

WORD_SIZE: 64

uname: Darwin 14.5.0 Darwin Kernel Version 14.5.0: Tue Sep 1 21:23:09 PDT 2015; root:xnu-2782.50.1~1/RELEASE_X86_64 x86_64 i386

Memory: 16.0 GB (10895.609375 MB free)

Uptime: 165.0 sec

Load Avg: 5.373046875 4.49658203125 2.02685546875

Intel(R) Core(TM) i5-3210M CPU @ 2.50GHz:

   speed         user         nice          sys         idle

irq

1 2500 MHz 634 s 0 s 262 s 775 s 0

s

2 2500 MHz 397 s 0 s 134 s 1130 s 0

s

3 2500 MHz 600 s 0 s 232 s 829 s 0

s

4 2500 MHz 395 s 0 s 138 s 1129 s 0

s

BLAS: libopenblas (DYNAMIC_ARCH NO_AFFINITY Sandybridge)

LAPACK: libopenblas

LIBM: libopenlibm

LLVM: libLLVM-3.3

Environment:

TERM = xterm-256color

PATH = /Users/nicholassenno/anaconda/bin:/Users/nicholassenno/.local/bin:/usr/local/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/usr/local/git/bin:/Library/TeX/texbin

XPC_FLAGS = 0x0

HOME = /Users/nicholassenno

Package Directory: /Users/nicholassenno/.julia/v0.4

3 required packages:

16 additional packages:

stevengj commented 8 years ago

Can you try:

rm(Pkg.dir("Cubature","deps","libcubature.dylib"))
rm(Pkg.dir("Cubature","deps","installed_vers"))
Pkg.build("Cubature")
Pkg.test("Cubature")

to force it to re-download the library?

sennosays commented 8 years ago

I tried your suggestion but it produced the same error.

I ended up removing julia and cloning the source from git. Afterwards the problem went away.

On Wed, Nov 4, 2015 at 12:51 PM, Steven G. Johnson <notifications@github.com

wrote:

Can you try:

rm(Pkg.dir("Cubature","deps","libcubature.dylib"))rm(Pkg.dir("Cubature","deps","installed_vers")) Pkg.build("Cubature") Pkg.test("Cubature")

to force it to re-download the library?

— Reply to this email directly or view it on GitHub https://github.com/stevengj/Cubature.jl/issues/11#issuecomment-153808046 .

Ph.D. candidate 532C Davey Laboratory Physics Department Eberly College of Science The Pennsylvania State University