Closed agniorf closed 7 years ago
staticfloat
commented
7 years ago Thanks for the report @agniorf. Can you do the following for me, and let me know if the issue is fixed. Please open a new julia session and post the output of:
Pkg.checkout("Homebrew")
using Homebrew
Homebrew.update(;verbose=true)
Pkg.build("Ipopt")
agniorf
commented
7 years ago Thanks so much for the prompt response!
| | |_| | | | (_| | | Version 0.5.0 (2016-09-19 18:14 UTC)
_/ |\__'_|_|_|\__'_| | Official http://julialang.org/ release
|__/ | x86_64-apple-darwin13.4.0
julia> Pkg.checkout("Homebrew")
INFO: Checking out Homebrew master...
INFO: Pulling Homebrew latest master...
INFO: No packages to install, update or remove
julia> using Homebrew
INFO: Recompiling stale cache file /Users/Agnes/.julia/lib/v0.5/Homebrew.ji for module Homebrew.
julia> Homebrew.update(;verbose=true)
Already up-to-date.
julia> Pkg.build("Ipopt")
INFO: Building Homebrew
Already up-to-date.
INFO: Building Ipopt
Warning: staticfloat/juliatranslated/libgfortran-6.2 already installed, it's just not linked.
Error: Formulae found in multiple taps:
* staticfloat/juliadeps/libgfortran
* staticfloat/juliatranslated/libgfortran
Please use the fully-qualified name e.g. staticfloat/juliadeps/libgfortran to refer the formula.
================================[ ERROR: Ipopt ]================================
LoadError: failed process: Process(`/Users/Agnes/.julia/v0.5/Homebrew/deps/usr/bin/brew link staticfloat/juliatranslated/libgfortran --force`, ProcessExited(1)) [1]
while loading /Users/Agnes/.julia/v0.5/Ipopt/deps/build.jl, in expression starting on line 89
================================================================================
================================[ BUILD ERRORS ]================================
WARNING: Ipopt had build errors.
- packages with build errors remain installed in /Users/Agnes/.julia/v0.5
- build the package(s) and all dependencies with `Pkg.build("Ipopt")`
- build a single package by running its `deps/build.jl` script
==============================================================================
IssamT
commented
7 years ago I've got a similar error while updating Homebrew.jl due the HDF5 found in multiple taps
INFO: Building Homebrew
Updated 3 taps (homebrew/core, homebrew/science, staticfloat/juliadeps).
==> New Formulae
abuse frobtads lincity-ng rawgl
advancemame frotz lolcat reminiscence
advancemenu fs-uae lxc residualvm
advancescan fuego magnetix rlvm
angband fuse-emulator mame robotfindskitten
angolmois gandi.cli mapcrafter rogue
ant@1.9 gearboy mednafen roll
arx-libertatis gearsystem mgba rom-tools
atari800 git-game minetest scummvm
aurora git-if mingw-w64 scummvm-tools
autorest git-quick-stats mkhexgrid sdlpop
avanor git-recent monitoring-plugins sha1dc
babel glkterm moon-buggy shellshare
ballerburg glktermw mupen64plus simple-obfs
bastet globjects myman simutrans
blastem glulxe mysql-utilities ski
bochs gnu-chess naga slashem
boost-mpi gnu-go nazghul snescom
bower gnu-shogi neopop-sdl solarus
brogue gnuski nesemu2 spaceinvaders-go
bubbros go-gui nestopia-ue staticfloat/juliadeps/scs118
buildifier go@1.7 nethack stella
c10t gobuster nethack4 stockfish
c2048 gpcslots2 nethacked stone-soup
cataclysm greed netris stormlib
cdogs-sdl grpc nettoe supermodel
cgoban guichan ninvaders supertux
chakra hatari np2 swiftplate
cheapglk hexgui npush sz81
cheops homebrew/science/acado nsnake taisei
chocolate-doom homebrew/science/bamm nsuds teleconsole
ckan homebrew/science/hdf5@1.8 nudoku telegram-cli
cockatrice homebrew/science/libbigwig nuvie tty-solitaire
collector-sidecar homebrew/science/m4ri nxengine tundra
color-code homebrew/science/mantaflow omega-rpg ucon64
corsixth homebrew/science/med-file onscripter ufoai
curseofwar homebrew/science/phyx open-tyrian uftp
dehydrated homebrew/science/racon openclonk uggconv
dgen homebrew/science/scram openjazz uniutils
dmtx-utils homebrew/science/xfig openmsx unnethack
docker-credential-helper homeworlds openrct2 vecx
dopewars httest opensyobon vitetris
dosbox huexpress openttd vmdktool
dosbox-x inform6 pachi webpack
dungeon instead pacman4console wesnoth
dvd-vr ivykis pc6001vx widelands
dwarf-fortress jnethack pioneer wumpus
easyrpg-player jpcsp pioneers xboard
einstein knot-resolver polyglot xmoto
elasticsearch@2.3 kompose ponscripter-sekai xrick
ems-flasher ktmpl ppsspp xshogi
enigma lcs pqiv xu4
exult lftp proselint yetris
fairymax libggz puzzles yosys
fceux liblcf pytouhou zboy
fifechan librealsense qdae zelda-roth-se
fizmo libspectrum qtads zsdx
fmsx libtcod quasi88 zsxd
freeciv libtensorflow raine
==> Updated Formulae
abcm2ps homebrew/science/bedops minizip
acmetool homebrew/science/biomake mitmproxy
afl-fuzz homebrew/science/blast mkvtoolnix
aha homebrew/science/bowtie monetdb
akka homebrew/science/bowtie2 mongo-c-driver
algol68g homebrew/science/cdo mongo-orchestration
alot homebrew/science/ceres-solver mongodb
amtterm homebrew/science/cgns monit
android-ndk homebrew/science/clinfo mono
ansible homebrew/science/cminpack monotone
ansible-cmdb homebrew/science/cmor mosquitto
ansiweather homebrew/science/dealii mpd
ant homebrew/science/des mpv
antigen homebrew/science/dextractor msgpack
antlr@3 homebrew/science/dgtal mutt
apache-flink homebrew/science/diamond mypy
apache-geode homebrew/science/dynare mysql-cluster
app-engine-python homebrew/science/enblend-enfuse nave
aptly-completion homebrew/science/etsf_io neo4j
arangodb homebrew/science/field3d netpbm
armor homebrew/science/flann newlisp
artifactory homebrew/science/freec nexus
assh homebrew/science/g2o nghttp2
atlassian-cli homebrew/science/getdp nifi
aurora-cli homebrew/science/gmap-gsnap no-more-secrets
autojump homebrew/science/gmt node
aws-sdk-cpp homebrew/science/gmt4 node-build
awscli homebrew/science/gnudatalanguage node@0.10
azure-cli homebrew/science/graph-tool node@0.12
bacula-fd homebrew/science/gtsam node@4
bagit homebrew/science/h5utils node@6
basex homebrew/science/hdf5 ✔ nodeenv
bash-completion homebrew/science/healpix nodenv
bash-preexec homebrew/science/hisat2 notmuch
bee homebrew/science/htslib nsd
bfg homebrew/science/hwloc nss
bind homebrew/science/igv nuget
binutils homebrew/science/igvtools nvi
bit homebrew/science/insighttoolkit nvm
bitrise homebrew/science/iva nzbget
blackbox homebrew/science/jellyfish opencoarrays
blueutil homebrew/science/kallisto openssl@1.1
botan homebrew/science/kat openvdb
buku homebrew/science/kmerstream osc
bullet homebrew/science/libbi osm2pgrouting
byteman homebrew/science/libmatio osm2pgsql
cake homebrew/science/libminc osquery
cargo-completion homebrew/science/libsbol osrm-backend
carina homebrew/science/libsequence p11-kit
carthage homebrew/science/littler packer
casperjs homebrew/science/lmfit packetbeat
cassandra homebrew/science/madlib paket
catimg homebrew/science/mallet pandoc-citeproc
ccache homebrew/science/matplotlib pandoc-crossref
cereal homebrew/science/mbsystem pango ✔
certbot homebrew/science/methpipe parallel
certigo homebrew/science/mfem pass
ceylon homebrew/science/mlpack pdf2htmlex
chaiscript homebrew/science/mlst pdfgrep
charm homebrew/science/moab pdftoedn
cheat homebrew/science/moose pdns
check homebrew/science/nanopolish pdnsrec
check_postgres homebrew/science/nccmp peco
checkstyle homebrew/science/nco percona-server
chicken homebrew/science/ncview perl
citus homebrew/science/nest pex
cjdns homebrew/science/netcdf pg_top
clang-format homebrew/science/nextflow pgcli
closure-compiler homebrew/science/nexusformat pgloader
codequery homebrew/science/nglib pgplot
coffeescript homebrew/science/nixio pgpool-ii
commandbox homebrew/science/oce pgroonga
compcert homebrew/science/octave pgrouting
conan homebrew/science/opencascade pidgin
concurrencykit homebrew/science/openfst pinentry
consul homebrew/science/opengrm-ngram pius
consul-backinator homebrew/science/opengrm-thrax pkcs11-helper
consul-template homebrew/science/openimageio planck
convox homebrew/science/openni2 plantuml
cookiecutter homebrew/science/packmol platypus
coreutils homebrew/science/paraview pldebugger
couchdb-lucene homebrew/science/pcl pmd
creduce homebrew/science/petsc pngquant
cromwell homebrew/science/poretools poco
crystal-icr homebrew/science/pykep podofo
crystal-lang homebrew/science/pymol poppler
csfml homebrew/science/quake postgis
csvtomd homebrew/science/r postgresql
curl homebrew/science/radx postgrest
curlpp homebrew/science/sambamba pre-commit
dark-mode homebrew/science/samblaster prometheus
datomic homebrew/science/seqdb protobuf-swift
davix homebrew/science/sga psql2csv
dbhash homebrew/science/shogun psqlodbc
dbt homebrew/science/silo purescript
dbus homebrew/science/slepc putty
ddrescue homebrew/science/snid pybind11
deis homebrew/science/spaced pyenv
depqbf homebrew/science/spades pyinvoke
diff-pdf homebrew/science/sratoolkit pyqt5
diff-so-fancy homebrew/science/statismo python3
digdag homebrew/science/stringtie qca
direnv homebrew/science/suite-sparse qscintilla2
dmd homebrew/science/sumo quantlib
docker homebrew/science/sundials quazip
docker-completion homebrew/science/swrcfit rancher-cli
docker-compose homebrew/science/tasr rancher-compose
docker-compose-completion homebrew/science/therion re2
docker-machine homebrew/science/tophat readline
docker-machine-completion homebrew/science/trilinos redis
doitlive homebrew/science/trinity redis-leveldb
dosfstools homebrew/science/vcfanno reposurgeon
doxygen homebrew/science/vigra ringojs
dpkg homebrew/science/visp rmlint
dscanner homebrew/science/vsearch robot-framework
dub homebrew/science/vtk rocksdb
dvm homebrew/science/wxmaxima roswell
eigen homebrew/science/xcdf rust
elasticsearch homebrew/science/xmgredit saltstack
elixir homebrew/science/xmi-msim scala@2.10
elixirscript httpie scala@2.11
embulk hugo scalaenv
entr hyper scipy
ephemeralpg hyperscan scm-manager
eralchemy i3status scmpuff
erlang ibex scriptcs
etcd idris scrypt
eventql imagemagick sec
excel-compare imagemagick@6 selenium-server-standalone
exim infer serf
fabio iperf3 sflowtool
fdroidserver ipfs sfml
feedgnuplot ironcli shadowsocks-libev
feh irssi shyaml
ffe jasper simple-tiles
ffmpeg jbake sip
file-roller jboss-forge skinny
filebeat jemalloc snap-telemetry
fio jenkins snappystream
fish jetty softhsm
flake8 jfrog-cli-go sonarqube
flatbuffers jid sops
flatcc jigdo sourcery
flow jlog spdlog
flyway jrnl sqlcipher
folly jruby sqldiff
fon-flash-cli json-fortran sqlite
fonttools jsonschema2pojo sqlite-analyzer
fossil juise sqlmap
fping juju sqlparse
freeradius-server juju@1.25 squid
freetds jump sshguard
fstar jvgrep sslyze
fzf kerl staticfloat/juliadeps/scs
gauge khal statik
gcc@4.9 khard stern
gcore kibana stlink
gearman knot storm
geckodriver kobalt stout
geographiclib kops suricata
geoserver kotlin svgcleaner
git kubernetes-cli svtplay-dl
git-annex kubernetes-helm swagger-codegen
git-archive-all kvazaar swiftformat
git-lfs lastpass-cli swiftgen
git-secret ldc swimat
git-town lean-cli syncthing
gitbucket leveldb syncthing-inotify
gitlab-ci-multi-runner libao sysbench
glib ✔ libarchive tarsnapper
gnome-autoar libav temporal_tables
gnu-sed libbluray tenyr
gnu-units libchamplain terraform
gnupg-pkcs11-scd libcouchbase terragrunt
gnutls libdvbpsi tesseract
go libebur128 texmath
goaccess libepoxy tgui
godep libfabric tidy-html5
gofabric8 libgadu tile38
google-java-format libgosu timelimit
gosu libgpg-error tippecanoe
govendor libgxps tnef
gperftools libhdhomerun todolist
gradle libmagic todoman
grails libosmium tomcat@7
grc libphonenumber tomcat@8.0
gron libpointing tor
groonga libpqxx treefrog
groovy libpst ttyd
gspell librdkafka twarc
gssh libre typescript
gst-editing-services libsigsegv unicorn
gst-libav libssh vagrant-completion
gst-plugins-bad libwbxml vala
gst-plugins-base libwebsockets vault
gst-plugins-good libxmp-lite vdirsyncer
gst-plugins-ugly libzdb vegeta
gst-python link-grammar verilator
gst-rtsp-server linkerd vert.x
gst-validate llvm vim
gstreamer lmdb vnstat
gti logstash vnu
gtk+3 logtalk wakatime-cli
gtk-vnc lsyncd walkmod
guile lynis wartremover
gx m-cli watchexec
hackrf macvim wget
hana mailutils wine
handbrake mandoc winetricks
harfbuzz ✔ mapnik wiredtiger
hashcat mapserver wireguard-tools
haxe mcabber wireshark
hebcal mecab-jumandic wolfssl
heroku media-info x265
hg-flow mediaconch xmake
hh memcached xonsh
highlight mercurial yadm
hledger meson yank
homebank metricbeat yarn
homebrew/science/abinit mg3a yaz
homebrew/science/alembic micro yle-dl
homebrew/science/alpscore midnight-commander youtube-dl
homebrew/science/anvio mighttpd2 zabbix
homebrew/science/arb mikutter zanata-client
homebrew/science/armadillo miller zeromq
homebrew/science/astrometry-net minimesos znapzend
homebrew/science/augustus minio zsh-history-substring-search
homebrew/science/bamtools minio-mc zstd
homebrew/science/barrnap minizinc
==> Renamed Formulae
bash-completion2 -> bash-completion@2 boost160 -> boost@1.60 mariadb100 -> mariadb@10.0
berkeley-db4 -> berkeley-db@4 erlang-r18 -> erlang@18 protobuf250 -> protobuf@2.5
boost155 -> boost@1.55 go14 -> go@1.4 protobuf260 -> protobuf@2.6
boost157 -> boost@1.57 go15 -> go@1.5
boost159 -> boost@1.59 go16 -> go@1.6
==> Deleted Formulae
apg homebrew/science/sspace-longread probatron4j
bip keybase rtpbreak
ctorrent lcab s3sync
cups-pdf libgroove silc-client
edelta malaga suomi-malaga-voikko
ee mingw-w64-binutils
esound node@5
Uninstalling glib... (427 files, 22.4MB)
==> Installing glib from staticfloat/juliatranslated
==> Downloading https://homebrew.bintray.com/bottles/glib-2.50.3.el_capitan.bottle.tar.gz
######################################################################## 100,0%
==> Pouring glib-2.50.3.el_capitan.bottle.tar.gz
🍺 /Users/itahiri/.julia/v0.5/Homebrew/deps/usr/Cellar/glib/2.50.3: 427 files, 22.4MB
Warning: Already linked: /Users/itahiri/.julia/v0.5/Homebrew/deps/usr/Cellar/glib/2.50.3
Uninstalling harfbuzz... (133 files, 4.9MB)
==> Installing harfbuzz from staticfloat/juliatranslated
==> Downloading https://homebrew.bintray.com/bottles/harfbuzz-1.4.4.el_capitan.bottle.tar.gz
######################################################################## 100,0%
==> Pouring harfbuzz-1.4.4.el_capitan.bottle.tar.gz
🍺 /Users/itahiri/.julia/v0.5/Homebrew/deps/usr/Cellar/harfbuzz/1.4.4: 133 files, 5.0MB
Warning: Already linked: /Users/itahiri/.julia/v0.5/Homebrew/deps/usr/Cellar/harfbuzz/1.4.4
Uninstalling hdf5... (181 files, 10.6MB)
==> Installing hdf5 from staticfloat/juliatranslated
==> Downloading https://homebrew.bintray.com/bottles-science/hdf5-1.10.0-patch1.el_capitan.bottle.tar.gz
######################################################################## 100,0%
==> Pouring hdf5-1.10.0-patch1.el_capitan.bottle.tar.gz
Error: An unexpected error occurred during the `brew link` step
The formula built, but is not symlinked into /Users/itahiri/.julia/v0.5/Homebrew/deps/usr
Formulae found in multiple taps:
* homebrew/science/hdf5
* staticfloat/juliatranslated/hdf5
Please use the fully-qualified name e.g. homebrew/science/hdf5 to refer the formula.
Error: Formulae found in multiple taps:
* homebrew/science/hdf5
* staticfloat/juliatranslated/hdf5
Please use the fully-qualified name e.g. homebrew/science/hdf5 to refer the formula.
====================================================[ ERROR: Homebrew ]====================================================
LoadError: failed process: Process(`/Users/itahiri/.julia/v0.5/Homebrew/deps/usr/bin/brew install --ignore-dependencies staticfloat/juliatranslated/hdf5`, ProcessExited(1)) [1]
while loading /Users/itahiri/.julia/v0.5/Homebrew/deps/build.jl, in expression starting on line 2
===========================================================================================================================After applying what @staticfloat suggested the issue my Pkg.update() went on successfully.
agniorf
commented
7 years ago I also ran again the suggestions of @staticfloat and the issue was resolved. Thank you very much!!
staticfloat
commented
7 years ago Thanks guys, this should be fixed for all users now, so I'm going to go ahead and close this.
This might be a dup of https://github.com/JuliaPackaging/Homebrew.jl/issues/163.
When i try to build Ipopt, I get the following error message:
Here’s the relevant lines in Ipopt’s
build.jl:@staticfloat