black colorbar (heatmap) on jupyter-notebook

asbisen commented 5 years ago

Describe the bug For some reason only in jupyter-notebook colorbar of a heatmap shows up as a black strip. Same code works fine inside jupyter-lab and atom. Additionally when I click "Edit in Chart Studio" the clorbar shows up correctly in plotly's web app.

Version info

julia> versioninfo()
Julia Version 1.0.1
Commit 0d713926f8 (2018-09-29 19:05 UTC)
Platform Info:
  OS: macOS (x86_64-apple-darwin14.5.0)
  CPU: Intel(R) Core(TM) i5-8259U CPU @ 2.30GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-6.0.0 (ORCJIT, skylake)

Please provide the following:

output of julia command versioninfo()

Output running the following in Julia 0.7 or greater: using Pkg; pkg"status" (if you are on Julia 0.6 or earlier run Pkg.status())

(v1.0) pkg> st
Status `~/.julia/environments/v1.0/Project.toml`
[c52e3926] Atom v0.7.10
[6710c13c] AutoGrad v1.1.1
[fbb218c0] BSON v0.2.1+ #master (https://github.com/MikeInnes/BSON.jl.git)
[ad839575] Blink v0.8.1
[336ed68f] CSV v0.4.2
[5d742f6a] CSVFiles v0.10.0
[944b1d66] CodecZlib v0.5.1
[3da002f7] ColorTypes v0.7.5
[c3611d14] ColorVectorSpace v0.6.2
[5ae59095] Colors v0.9.5
[a93c6f00] DataFrames v0.14.1
[864edb3b] DataStructures v0.14.0
[0c46a032] DifferentialEquations v5.3.1
[31c24e10] Distributions v0.16.4
[89b67f3b] ExcelFiles v0.6.1
[4f61f5a4] FFTViews v0.2.0
[7a1cc6ca] FFTW v0.2.4
[5789e2e9] FileIO v1.0.2
[8fc22ac5] FilePaths v0.7.0
[53c48c17] FixedPointNumbers v0.5.3
[587475ba] Flux v0.6.8
[59287772] Formatting v0.3.4
[f6369f11] ForwardDiff v0.10.1
[28b8d3ca] GR v0.35.0
[c91e804a] Gadfly v1.0.0
[f67ccb44] HDF5 v0.10.2
[7ec9b9c5] Humanize v1.0.0
[7073ff75] IJulia v1.14.0+ #master (https://github.com/JuliaLang/IJulia.jl.git)
[2803e5a7] ImageAxes v0.5.0
[a09fc81d] ImageCore v0.7.3
[6a3955dd] ImageFiltering v0.5.0
[6218d12a] ImageMagick v0.7.1
[80713f31] ImageSegmentation v1.0.1
[02fcd773] ImageTransformations v0.7.0
[86fae568] ImageView v0.8.1
[916415d5] Images v0.16.1
[1c8ee90f] IterableTables v0.10.0
[033835bb] JLD2 v0.1.2
[682c06a0] JSON v0.19.0
[e5e0dc1b] Juno v0.5.3
[1902f260] Knet v1.1.1
[b964fa9f] LaTeXStrings v1.0.3
[30fc2ffe] LossFunctions v0.5.0
[ae8d54c2] Luxor v1.1.3
[dbeba491] Metalhead v0.3.0
[ffc61752] Mustache v0.5.7
[47be7bcc] ORCA v0.2.0
[6fe1bfb0] OffsetArrays v0.8.1
[5fb14364] OhMyREPL v0.3.0
[a15396b6] OnlineStats v0.19.2
[429524aa] Optim v0.17.1
[3b7a836e] PGFPlots v3.0.1
[8314cec4] PGFPlotsX v0.3.2
[9b87118b] PackageCompiler v0.5.0
[46a55296] ParquetFiles v0.1.0
[b98c9c47] Pipe v1.0.0+ #master (https://github.com/oxinabox/Pipe.jl.git)
[f0f68f2c] PlotlyJS v0.12.0+ #master (https://github.com/sglyon/PlotlyJS.jl.git)
[91a5bcdd] Plots v0.21.0
[92933f4c] ProgressMeter v0.6.1
[438e738f] PyCall v1.18.5
[d330b81b] PyPlot v2.6.3
[dca85d43] QuartzImageIO v0.5.0
[1a8c2f83] Query v0.10.1
[295af30f] Revise v0.7.12
[20b4e77b] Snippets v0.0.0 [`~/.julia/dev/Snippets`]
[276daf66] SpecialFunctions v0.7.2
[1463e38c] StatFiles v0.6.1
[90137ffa] StaticArrays v0.9.2
[2913bbd2] StatsBase v0.25.0
[a110ec8f] Temporal v0.5.3
[9e3dc215] TimeSeries v0.14.0
[b8865327] UnicodePlots v0.3.1
[112f6efa] VegaLite v0.5.0
[ddb6d928] YAML v0.3.2
[e88e6eb3] Zygote v0.1.0+ #master (https://github.com/FluxML/Zygote.jl.git)

sglyon commented 5 years ago

Hmm this is strange indeed. I'm not sure what the problem is. Do you get this on different front ends? (juno/ijulia/repl/etc.)?

what about when you save the figure?

asbisen commented 5 years ago

Nope I only see this issue on jupyter-notebook after upgrading my install; PlotlyJS.jl is not longer working with jupyter-lab with recent updates. I am not sure what broke the install, maybe WebIO.

But I am able to see the correct plots as I expect them to be while using Atom or Visual Studio Code.

JuliaPlots / PlotlyJS.jl

black colorbar (heatmap) on jupyter-notebook #251